PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100122050061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 334aa    MW: 36698.4 Da    PI: 4.3519
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100122050061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.71.9e-151961345
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                  ie++   + +fskRr g++KK  EL++LC+a++ +i+fs+t++
  Ote100122050061|100122050061 19 IESQDDLYASFSKRRLGLFKKGGELCTLCGADIGIIVFSPTDN 61
                                  888889999*******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-21968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.904969IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-211081IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-111131IPR002100Transcription factor, MADS-box
PfamPF003191.0E-171965IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-113146IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-114667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAAPARQTRG RQRIPMRLIE SQDDLYASFS KRRLGLFKKG GELCTLCGAD IGIIVFSPTD  60
NPFSFFSPSM ESVFERYASP DQPPKHAARA VDAHXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXEGLAEID RTREKGWWEE ASVETLNKEQ VEDWTMWFNN FKDRVEIQIQ  180
HLQNGGSTSS MNQLQNGRDG SSSSAAEAAA TGLLNLSGGG DQQCYYPSPQ IDMYGGGESS  240
SQYVYRQPLS PYFSPEYRYY VSPGADDGGS GGGGGDESGQ HGFLPPTMNQ STSMSFAPXX  300
XXXXXXVYSG AGDLSNAGEN NEDDAGTSNQ GGNE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082263.13e-59MADS-box transcription factor 17-like
TrEMBLA0A022S1J22e-55A0A022S1J2_ERYGU; Uncharacterized protein
STRINGMigut.A00408.1.p1e-55(Erythranthe guttata)
STRINGMigut.K00930.1.p6e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138