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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100119640021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HSF | ||||||||
Protein Properties | Length: 248aa MW: 28636.6 Da PI: 9.852 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.4 | 1.5e-35 | 22 | 114 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k++e+++d+++++++sw e+ n+f+v+ + ef++++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF+ Ote100119640021|100119640021 22 FLSKTFELVNDSATDHIVSWGEDRNTFIVWRPPEFSRHLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFA 93 9*****************************************************************99.........**** PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 ++ F+kg+k+ll++i+r+k++ Ote100119640021|100119640021 94 NEFFRKGEKHLLCEIHRRKTA 114 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.8E-38 | 14 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.0E-57 | 18 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.5E-33 | 19 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.5E-19 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.0E-31 | 22 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-19 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 61 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-19 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVDKSGTILL SLDSQKSVPA PFLSKTFELV NDSATDHIVS WGEDRNTFIV WRPPEFSRHL 60 LPNYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANEFFRKG EKHLLCEIHR RKTAQPQIAI 120 GGHHHYSPLR NNCCGDSWSA LSEDNEILRR NNNLLISELS HMRKLYNDII YFVQNHVKPV 180 APANFHSSSP PQPADMAAAE ETYRTKLFGV PLPSRKRLHS EYNSSTAIKK SRLVIQKDDL 240 GLNLMSMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-21 | 17 | 114 | 16 | 123 | Heat shock factor protein 1 |
5d5u_B | 7e-21 | 17 | 113 | 25 | 131 | Heat shock factor protein 1 |
5d5v_B | 7e-21 | 17 | 113 | 25 | 131 | Heat shock factor protein 1 |
5d5v_D | 7e-21 | 17 | 113 | 25 | 131 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452467.1 | 1e-109 | PREDICTED: heat stress transcription factor B-4-like isoform X1 | ||||
Swissprot | Q9C635 | 3e-91 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A4D9BD77 | 1e-116 | A0A4D9BD77_SALSN; Heat shock transcription factor, other eukaryote | ||||
STRING | Gorai.010G020700.1 | 1e-109 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2721 | 24 | 50 |