PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100119570112
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 21854.3 Da    PI: 9.6554
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100119570112genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  k+i+n + rqvtfskRr g++KKA+ELSvLCda+va+iifsstgkl++y+s
  Ote100119570112|100119570112  9 KKIDNVTARQVTFSKRRRGVFKKAQELSVLCDADVALIIFSSTGKLFDYAS 59
                                  68***********************************************86 PP
2K-box363e-13781354198
                         K-box  41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                                   e+L++Ls+++LqqLe+ Le +l+++ +kK e ++++i++lq+k  +l +enk+Lr+++
  Ote100119570112|100119570112  78 EELQELSIQQLQQLEKSLELGLSRVIQKKGEKIMKEISQLQEKGMQLMDENKRLRMQV 135
                                   89*****************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.983161IPR002100Transcription factor, MADS-box
CDDcd002652.43E-33260No hitNo description
PRINTSPR004044.8E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-27363IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-272338IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.94837141IPR002487Transcription factor, K-box
PRINTSPR004044.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1078135IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAREKIQIKK IDNVTARQVT FSKRRRGVFK KAQELSVLCD ADVALIIFSS TGKLFDYASS  60
RXXXXXXXXV VTCPNIREEL QELSIQQLQQ LEKSLELGLS RVIQKKGEKI MKEISQLQEK  120
GMQLMDENKR LRMQVIDLSK RMGESEVVVY EEGQSSVSVT NAGAAPPQDY DSSDTSLKLG  180
SVTFSIRLIP IKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19160160MEF2C
5f28_B7e-19160160MEF2C
5f28_C7e-19160160MEF2C
5f28_D7e-19160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554864.18e-80MADS-box protein SVP
SwissprotQ9FUY65e-68JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A4D8YBA61e-79A0A4D8YBA6_SALSN; Uncharacterized protein
STRINGVIT_00s0313g00070.t017e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]