PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100117440021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 316aa MW: 37361 Da PI: 5.3301

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100117440021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59	1.2e-18	59	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W++qe+++Lie+r ++e ++ +++++ +lWe v++++re+g+ r++ qCk+kw++l + y+ ++++ + s p+ Ote100117440021\|100117440021 59 QWSNQETRELIEIRAQLEWAFTAANRNINLWELVAERIREKGYWRTADQCKCKWDSLVNGYEGKEASDMD------SARPF 133 7************************************************************99999887......35699 PP trihelix 82 fdqle 86 f++++ Ote100117440021\|100117440021 134 FNEMH 138 9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	6.19E-20	58	123	No hit	No description
Pfam	PF13837	3.6E-16	59	139	No hit	No description
PROSITE profile	PS50090	7.793	60	116	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MYGYTGNXXX XXXXXXXXIN PIISQRFLHH HQPIMIPVQP SPPPPTFDDE LRRDGRFPQW 60 SNQETRELIE IRAQLEWAFT AANRNINLWE LVAERIREKG YWRTADQCKC KWDSLVNGYE 120 GKEASDMDSA RPFFNEMHAV FTARANAMQQ SQVEAETGVV RGGKRPNDTS EDQSYEDFXX 180 XXXXXXXIEV DHRVGKGRVV SKPKGGRDKR QKTKENENES GSNLNVFQEI MRNFNEQQRK 240 IDMEWWAVME KHAEEREQIE QEWRQRMENL EREALRMEQA WXXXXXXXXX XXXXXXEKRD 300 ALITALLNQL LHDENP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074149.1	6e-94	trihelix transcription factor GT-3b-like
TrEMBL	A0A2G9H9F7	1e-89	A0A2G9H9F7_9LAMI; Transcription factor GT-2
TrEMBL	A0A4D9BF41	7e-90	A0A4D9BF41_SALSN; Uncharacterized protein
STRING	Migut.E01394.1.p	6e-65	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23