PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100117380011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 241aa    MW: 26335.9 Da    PI: 7.1653
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100117380011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.52.4e-14250150
                           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50
                                  lp+GfrFhP+deel+++yL k v+g  ++l   + +vd++++ePwd+p+k
  Ote100117380011|100117380011  2 LPAGFRFHPRDEELICDYLLKWVTGAAHPL-PLFIQVDLNSCEPWDIPAK 50
                                  799************************999.67889***********953 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.4751117IPR003441NAC domain
SuperFamilySSF1019411.05E-262117IPR003441NAC domain
PfamPF023651.8E-9391IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
RLPAGFRFHP RDEELICDYL LKWVTGAAHP LPLFIQVDLN SCEPWDIPAK GTGNMQPGSE  60
QIVPQFRVTG RLPGRAPKGR KTGWVMHEFR LEGAHGPGPK SISPAKEDWV LCRVFFKSKS  120
EMATKSQEGG NRYDVAASSP PLPPLMEPFF ALKGNDDEYN EQVPCFSIFD TNPNFPILND  180
VDPPPAMSHH SSCDNKMIKA VLNHLTAKIG SGGNDETGIN GGSPSFGGRK LRQLSLASGG  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-15211815169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095676.18e-67NAC domain-containing protein 21/22-like
TrEMBLA0A2G9I9R79e-62A0A2G9I9R7_9LAMI; Uncharacterized protein
STRINGMigut.M01566.1.p3e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297