PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100116070171
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 351aa    MW: 39014.3 Da    PI: 5.5376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100116070171genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS62.31e-1946113168
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppse 68 
                                   l++lLl+cA++v+sg+ e+a+  L+ +s+lasp+gd+mqR+aayfteALa r+++ +++l kal++++
  Ote100116070171|100116070171  46 LIHLLLACANHVASGSIENANIGLEYISHLASPNGDTMQRIAAYFTEALADRMLKGWPGLHKALNSTK 113
                                   689************************************************************98875 PP
2GRAS205.33.5e-6311433398274
                          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                                    N aIlea+ege+ vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke l ++++rL++ Ae+l++pf+f
  Ote100116070171|100116070171 114 INFAILEAMEGEKVVHIIDLHCFEPAQWISLIQELSTRPEGPPHLRITGIHE----QKEVLDQMAHRLNEEAEKLDIPFQF 190
                                   589*************************************************....9************************ PP

                          GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................. 214
                                   n+ v++rle+l++e Lrvk+gEa+a+++vlqlh+ll                                             
  Ote100116070171|100116070171 191 NP-VVSRLENLDVECLRVKTGEAVAISSVLQLHSLLafddetlqknspslskrvlhinphtfgdflekdamstctaspesa 270
                                   **.7***************************************************************************** PP

                          GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                                       ++++++s+++++L+++++lsPk++vv+eqe++hn++s+++r++eal++y+alfd+le  
  Ote100116070171|100116070171 271 lssPRPTPISSNISSFLSALRGLSPKLLVVTEQESNHNRTSLMDRIVEALNFYAALFDCLEXX 333
                                   *998888888899***********************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.05620351IPR005202Transcription factor GRAS
PfamPF035143.6E-1746113IPR005202Transcription factor GRAS
PfamPF035141.2E-60114333IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVPEEGSSSV SSSPLQMFSM MSLSPGLGFP YPWLREMKSE ERGLHLIHLL LACANHVASG  60
SIENANIGLE YISHLASPNG DTMQRIAAYF TEALADRMLK GWPGLHKALN STKINFAILE  120
AMEGEKVVHI IDLHCFEPAQ WISLIQELST RPEGPPHLRI TGIHEQKEVL DQMAHRLNEE  180
AEKLDIPFQF NPVVSRLENL DVECLRVKTG EAVAISSVLQ LHSLLAFDDE TLQKNSPSLS  240
KRVLHINPHT FGDFLEKDAM STCTASPESA LSSPRPTPIS SNISSFLSAL RGLSPKLLVV  300
TEQESNHNRT SLMDRIVEAL NFYAALFDCL EXXXXXSIYR APKDREDAVR A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-39343307277Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881941.11e-170scarecrow-like protein 3
RefseqXP_015881942.11e-170scarecrow-like protein 3
SwissprotQ9LPR81e-133SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2R6RA361e-178A0A2R6RA36_ACTCH; Scarecrow-like protein
STRINGVIT_13s0019g01220.t011e-169(Vitis vinifera)
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]