PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100113880081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 277aa MW: 32003.1 Da PI: 6.8152

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100113880081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51	3.7e-16	52	133	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt++e+l+L++a ++ + +r++l+ W+ev++k+ +e ++er+ +qC+++++ l+k+ykk+k +++ s+++y Ote100113880081\|100113880081 52 WTERETLVLLDAWGDRFLKHGRKSLRSEEWQEVAEKVsQESKIERTDTQCRNRLDTLKKKYKKEKMKLGEN----ASEWVY 128 ***********************************88999********************99984....568* PP trihelix 82 fdqle 86 f++++ Ote100113880081\|100113880081 129 FKKID 133 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-5	51	116	IPR009057	Homeodomain-like
Pfam	PF13837	1.5E-22	51	135	No hit	No description
PROSITE profile	PS50090	6.446	52	109	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGEVRHPKKR KLKNLISSYE FAPRQPPAPL PTPPPSVNPK PSYGGRNPLT DWTERETLVL 60 LDAWGDRFLK HGRKSLRSEE WQEVAEKVSQ ESKIERTDTQ CRNRLDTLKK KYKKEKMKLG 120 ENASEWVYFK KIDALLSSQP PQQTGLSCGV DSGEYVFMNP KVYLNRSNGL DEMMDSPGNS 180 TEGEEDEPEG LPPKKTSNGK MRGSFKMLAD SFQKFSEIYE RIESSKREQM VELENMRMEF 240 HRDLELQKRE IVERAQAEIA KIRRGEDEED NAENMSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072329.1	1e-141	trihelix transcription factor ASIL1-like
Refseq	XP_011072330.1	1e-141	trihelix transcription factor ASIL1-like
TrEMBL	A0A4D9BF00	1e-136	A0A4D9BF00_SALSN; Uncharacterized protein
STRING	cassava4.1_009108m	1e-130	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31