PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100109180101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | WRKY | ||||||||
Protein Properties | Length: 352aa MW: 39394 Da PI: 10.2172 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 6.3e-32 | 286 | 343 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Ote100109180101|100109180101 286 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDDPSMLIVTYEGEHNHP 343 9************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.5E-15 | 236 | 282 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-34 | 272 | 344 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.389 | 279 | 345 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-27 | 282 | 344 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-40 | 284 | 344 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-28 | 286 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MNLFFPSPLE FLGFGIWANI AAVESCHRVI TILNQPHDQN LCRNLVEQTG EAVKKFKKVV 60 SLLSSSSGHA RVRKSNKIIA PYPQNILLEN PISQNNDHHH HQLKPLYPLQ INPTDQEIIK 120 NSLTLGSTSL ELSSHGKNPR LPQQTPPSNH HFXXXXXXXX XXXXXXXXXX XAELVYRRSN 180 SGISLNFDSS SCTPTMSSTR SFISSLSMDG SVTNLDGSTF RFGAARSADQ ASLHHRRRCS 240 GRGEDGSVKC GGSSKCHCSK KRWKHRVKRS VKVPAISNKI ADIPPDEYSW RKYGQKPIKG 300 SPHPRGYYKC SSMRGCPARK HVERCLDDPS MLIVTYEGEH NHPRLPSQSA IA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-20 | 277 | 346 | 7 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080000.1 | 1e-165 | probable WRKY transcription factor 21 isoform X1 | ||||
Swissprot | O04336 | 1e-115 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A0D5YA32 | 0.0 | A0A0D5YA32_SALMI; WRKY protein | ||||
STRING | XP_009618397.1 | 1e-155 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3271 | 23 | 50 |