PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100104420031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 250aa MW: 28196.2 Da PI: 4.4625 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.3 | 4.8e-17 | 50 | 92 | 12 | 54 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++ Le+ Fe ++++ e++++LAkkl+L+ rqV vWFqNrRa+ Ote100104420031|100104420031 50 VHMLEKSFEAENKLEPERKTQLAKKLNLPPRQVAVWFQNRRAR 92 678***************************************9 PP | |||||||
2 | HD-ZIP_I/II | 99.6 | 2.8e-32 | 50 | 135 | 11 | 92 |
HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk....tkqlEkdyeaLkraydalkeenerLekeveeL 87 v++LE+sFe+e+kLeperK++la++L+l prqvavWFqnrRAR qlE+dy++Lk++yd+l+ + +++ ke+++L Ote100104420031|100104420031 50 VHMLEKSFEAENKLEPERKTQLAKKLNLPPRQVAVWFQNRRARXXxxxxXXQLERDYDQLKSSYDSLRCNYDSIVKENDKL 130 79*****************************************86222257****************************** PP HD-ZIP_I/II 88 reelk 92 ++el Ote100104420031|100104420031 131 KSELL 135 *9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 7.06E-15 | 39 | 92 | No hit | No description |
SMART | SM00389 | 1.6E-12 | 44 | 100 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-16 | 49 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.75E-14 | 49 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.8E-14 | 50 | 92 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.03 | 50 | 96 | IPR001356 | Homeobox domain |
Pfam | PF02183 | 2.2E-15 | 101 | 142 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MESGRIFFEP SCHNNMLFLG NGDSGFRGIS IITAHFFGSR KTDDQRGRVV HMLEKSFEAE 60 NKLEPERKTQ LAKKLNLPPR QVAVWFQNRR ARXXXXXXXX QLERDYDQLK SSYDSLRCNY 120 DSIVKENDKL KSELLSLTDK LQPKETAGEL DGKYEDAVPA DAPPRLQNTV KVEDRLSTGS 180 NGSAVVDDDG RQLLDSGDSY FPNNEYPQCM AAVDGINSEE DDGSDDGGSY FTDVFAVAEQ 240 QEPIGWCIWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849408.1 | 1e-116 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 3e-59 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A022RXF0 | 1e-115 | A0A022RXF0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H00128.1.p | 1e-115 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7891 | 23 | 30 |
Publications ? help Back to Top | |||
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