PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100104140121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 706aa    MW: 79650.9 Da    PI: 7.1604
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100104140121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.38.1e-37115191177
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   +Cqv+gCe+d+se+k yh+rh+vC  +++a +v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  Ote100104140121|100104140121 115 RCQVPGCEVDISELKGYHKRHRVCLRCANAGSVILDGESKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 191
                                   6***********************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-28112177IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.598113190IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-34114193IPR004333Transcription factor, SBP-box
PfamPF031101.4E-27116190IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
ETSSPPIPSV DSEAGXXXXX XXXXXXXEPT SSSLLDWSDF LDFNLDEGLH VSFPHSESEQ  60
PENXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXERG KKRTRVGRVP GGPARCQVPG  120
CEVDISELKG YHKRHRVCLR CANAGSVILD GESKRYCQQC GKFHILSDFD EGKRSCRRKL  180
ERHNNRRRRK PNDSKENVEK ESQVIILAGD LSGDDDTGKD EIRVSGQIEA TEILLESDRQ  240
VSAPGSQNLQ SDSVASFTTS DDTRVEADKQ NLKFKQFPLN CDNKSSFSSA CPAGRISFKL  300
YDWNPAEFPR PLRHQIFQWL ASMPVELEGY IRPGCTILTA FIAMPKPVWC KLSEDPALCI  360
KDLVSSPGSL LSSRGTMHVY LNDTIFRVTT DASSVLEVQA KDQAPKLHYI YPNCFEAGRP  420
MEFVACGSHL LQPNFRWRSS QVENQSGLSN FIPILIGDKE TCKEMEVLQR KGEMPFFSQE  480
LSSPQPACEV FASRQSDYSE LVLDVAWLLK KPVSEKNLIS SHIQRLNFLL EYLIKNKSSV  540
ILEGLYSVWR AAMDNNLVND NSDSDVRILH KNMETARRRL APKLNKKEFP EMPVPNGNCY  600
RHSSKNDLVT HQGVGRTSEN MLGVSRPSSS SPDEDVRIPL LKDEVMMNVN IMERRGMSRS  660
RWLSNSRLVI MGVVMSVGVC LGVCAVVLHP QRISQIVHNC LFDNSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A9e-43111193183squamosa promoter binding protein-like 7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071504.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A075FEV20.0A0A075FEV2_SALMI; SQUAMOSA promoter binding protein-like 7 (Fragment)
STRINGMigut.N00133.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433