PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100104140051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 757aa    MW: 85375.3 Da    PI: 7.3165
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100104140051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.18.9e-37151227177
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   +Cqv+gCe+d+se+k yh+rh+vC  +++a +v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  Ote100104140051|100104140051 151 RCQVPGCEVDISELKGYHKRHRVCLRCANAGSVILDGESKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 227
                                   6***********************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-28148213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.598149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.1E-33150229IPR004333Transcription factor, SBP-box
PfamPF031101.5E-27152226IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MQEFDSPHQS NDSKANAASL LSSLCPHLLQ FSNPTRETSS PPIPSVDSEA GXXXXXXXXX  60
XXXEPTSSSL LDWSDFLDFN LDEGLHVSFP HSESEQPENX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXERGKKRT RVGRVPGGPA RCQVPGCEVD ISELKGYHKR HRVCLRCANA  180
GSVILDGESK RYCQQCGKFH ILSDFDEGKR SCRRKLERHN NRRRRKPNDS KENVEKESQV  240
IILAGDLSGD DDTGKDEIRV SGQIEATEIL LESDRQVSAP GSQNLQSDSV ASFTTSDDTR  300
VEADKQNLKF KQFPLNCDNK SSFSSACPAG RISFKLYDWN PAEFPRPLRH QIFQWLASMP  360
VELEGYIRPG CTILTAFIAM PKPVWCKLSE DPALCIKDLV SSPGSLLSSR GTMHVYLNDT  420
IFRVTTDASS VLEVQAKDQA PKLHYIYPNC FEAGRPMEFV ACGSHLLQPN FRRVNYCGYC  480
CTSILHRWRS SQVENQSGLS NFIPILIGDK ETCKEMEVLQ RKGEMPFFSQ ELSSPQPACE  540
VFASRQSDYS ELVLDVAWLL KKPVSEKNLI SSHIQRLNFL LEYLIKNKSS VILEGLYSVW  600
RAAMDNNLVN DNSDSDVRIL HKNMETARRR LAPKLNKKEF PEMPVPNGNC YRHSSKNDLV  660
THQGVGRTSE NMLGVSRPSS SSPDEDVRIP LLKDEVMMNV NIMERRGMSR SRWLSNSRLV  720
IMGVVMSVGV CLGVCAVVLH PQRISQIVHN CLFDNSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-42147230184squamosa promoter binding protein-like 7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071504.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A075FEV20.0A0A075FEV2_SALMI; SQUAMOSA promoter binding protein-like 7 (Fragment)
STRINGMigut.N00133.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433