PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100102920111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14561.4 Da    PI: 9.4198
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100102920111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-2880124650
                                   HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                    +nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Ote100102920111|100102920111  80 XTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 124
                                   58******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.8E-2553126IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.48367127IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-236989IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-2380127IPR002100Transcription factor, MADS-box
PfamPF003192.1E-2481123IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-2389104IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-23104125IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MQGLLARSYK YKPPLSRKQL HSIFCNSSIH SYNSSSSSEN PELLLPYLLL PSPGIGVVEL  60
AAEERQGXXX XXXXXXXXXX TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LVVFSSRGRL  120
YEYANNSFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A8e-16821281561Myocyte-specific enhancer factor 2B
1n6j_B8e-16821281561Myocyte-specific enhancer factor 2B
1tqe_P7e-16821281662Myocyte-specific enhancer factor 2B
1tqe_Q7e-16821281662Myocyte-specific enhancer factor 2B
1tqe_R7e-16821281662Myocyte-specific enhancer factor 2B
1tqe_S7e-16821281662Myocyte-specific enhancer factor 2B
6c9l_A7e-16821281662Myocyte-specific enhancer factor 2B
6c9l_B7e-16821281662Myocyte-specific enhancer factor 2B
6c9l_C7e-16821281662Myocyte-specific enhancer factor 2B
6c9l_D7e-16821281662Myocyte-specific enhancer factor 2B
6c9l_E7e-16821281662Myocyte-specific enhancer factor 2B
6c9l_F7e-16821281662Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960599.12e-26MADS-box transcription factor 58
RefseqXP_027060990.19e-27floral homeotic protein AGAMOUS-like
TrEMBLA0A0D9WDR72e-26A0A0D9WDR7_9ORYZ; Uncharacterized protein
STRINGLPERR05G05550.13e-27(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625