PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100102580001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 297aa    MW: 32147.5 Da    PI: 8.2257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100102580001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067126148123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C+ C+++F++   L  H  +H
  Ote100102580001|100102580001 126 YECKTCNRTFPSFQALGGHRASH 148
                                   99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.97E-8125148No hitNo description
PROSITE profilePS5015710.658126153IPR007087Zinc finger, C2H2
PfamPF139129.6E-13126150IPR007087Zinc finger, C2H2
SMARTSM003550.052126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-8199226No hitNo description
PROSITE profilePS501579.39204231IPR007087Zinc finger, C2H2
PfamPF139123.4E-11204228IPR007087Zinc finger, C2H2
SMARTSM003550.048204226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKSEILELSA SNDQMIVKGK RSKRPRPSSS ASSNGGGCDG AADFYHPLSV SSPTTSSGIS  60
TSTEEDEDMA NCLILLARGN FPPQTKTPAV EKKISNRRFA EMAXXXXXXX XXXXXXXXXX  120
XXXXXYECKT CNRTFPSFQA LGGHRASHKK PKTAGEVVQR NSPPHDQEEG EEKGQLKKLS  180
TIISPPPPST QLSSKSDPNK PKMHECSICG SEFGSGQALG GHMRRHRPAP SPSAKNPASI  240
DNSTTSSSHE TCDKGRSMLT LDLNLPAPPD DEKMQQFPAE QQPPVVFSAA ALVGCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089966.14e-91zinc finger protein ZAT5-like
TrEMBLA0A4D9A8355e-99A0A4D9A835_SALSN; Uncharacterized protein
STRINGMigut.N02543.1.p1e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480