PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100100460231

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Protein Properties

Length: 363aa MW: 40814.3 Da PI: 4.636

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100100460231	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.9	5.9e-16	56	145	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k +++s+v+ +l lpk f+ +h + ++ t++l d + ++++ k+ ++k++ l++GW++F a++L + D++v Ote100100460231\|100100460231 56 FLKLMLKSHVSGGFWLGLPKWFCVAHLPD--QDETVVLVDDDEKEYNTKYLVDKTG----LSGGWRGFSMAHKLLDEDVLV 130 89**********************533..5669***********888888....***************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F+l++ +f +v ++r Ote100100460231\|100100460231 131 FHLIEPCKF--KVYIVR 145 **98888..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.9E-19	49	146	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.04E-21	49	146	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.18E-25	54	145	No hit	No description
SMART	SM01019	1.1E-21	56	147	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.166	56	147	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-13	56	146	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MLEQEESAIA EMPLLCLPSK ESPANDVDSS TVGVANSTME RAKEVQANLS PRCPSFLKLM 60 LKSHVSGGFW LGLPKWFCVA HLPDQDETVV LVDDDEKEYN TKYLVDKTGL SGGWRGFSMA 120 HKLLDEDVLV FHLIEPCKFK VYIVRARSRT EIAATNLLNL NSHSDLIIEE DLLITERTSD 180 QCLELVNDEK EDVTGLNYLS EAAACQTEDD SDHSSSEIMD FIRFSDSPLS FKDVKGFKDF 240 HVHVYGLLID AEIPTHVRKK YHELCRSQNT FLHETIMQGL NTKLVAGMIC ETTNIADAIR 300 AAKASAGTHH LQSWDTTLKA FEDLGMVVGF LRARIDKLLG VFDEVQAKID LKRTERDEAE 360 EEM

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MLEQEESAIA EMPLLCLPSK ESPANDVDSS TVGVANSTME RAKEVQANLS PRCPSFLKLM  60
LKSHVSGGFW LGLPKWFCVA HLPDQDETVV LVDDDEKEYN TKYLVDKTGL SGGWRGFSMA  120
HKLLDEDVLV FHLIEPCKFK VYIVRARSRT EIAATNLLNL NSHSDLIIEE DLLITERTSD  180
QCLELVNDEK EDVTGLNYLS EAAACQTEDD SDHSSSEIMD FIRFSDSPLS FKDVKGFKDF  240
HVHVYGLLID AEIPTHVRKK YHELCRSQNT FLHETIMQGL NTKLVAGMIC ETTNIADAIR  300
AAKASAGTHH LQSWDTTLKA FEDLGMVVGF LRARIDKLLG VFDEVQAKID LKRTERDEAE  360
EEM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092580.1	1e-136	B3 domain-containing protein Os01g0234100 isoform X1
TrEMBL	A0A022RQ98	1e-114	A0A022RQ98_ERYGU; Uncharacterized protein
STRING	Migut.N01194.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43