PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100097240021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 939aa    MW: 106157 Da    PI: 4.8954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100097240021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.4e-11848243
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                                  g W   Ede+l+ av ++G+++W++I++ +  ++++kqck r
  Ote100097240021|100097240021  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKAR 48
                                  78*****************************.********87 PP
2Myb_DNA-binding32.12.7e-1058100348
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Ote100097240021|100097240021  58 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 100
                                   6*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.968257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-12548IPR009057Homeodomain-like
SuperFamilySSF466895.75E-14682IPR009057Homeodomain-like
SMARTSM007179.6E-10655IPR001005SANT/Myb domain
PfamPF002492.8E-9848IPR001005SANT/Myb domain
CDDcd001675.55E-91049No hitNo description
SMARTSM007177.9E-956102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1057101IPR009057Homeodomain-like
CDDcd116597.81E-2757103No hitNo description
PROSITE profilePS5129413.58858104IPR017930Myb domain
PfamPF139214.4E-959107No hitNo description
PfamPF118316.5E-54403651IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 939 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARCD PLHLPQTEWT  60
REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAACAKDENY EPGDDPRKLR  120
PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK QLEEARRLAS  180
LQKRRELKAA GINLRNKKRK RRGIDYNAEI PFEKRPPPGF YDVTDEDQPA GLVKFPTTIE  240
ELEGERRVDK EARLRKQDIA RNKIAQRQDA PSAILQANKL NDPEAVRKRS KLNLPSPQIP  300
DHELEAIAKM GIATDLLGNE ELTEGNAATR ALLATYAQTP RQGMTPMRTP QRTPAGKQDV  360
IMMEAENQRR LTLSQTPLLG GDNPLLHPSD FSGVTPKKKE IATPNPLLTP SATPGGTGLT  420
PRIGMTPSRD VYSVGMTPKG TLMRDELRIN EDIDMHDSGK LRQSDSKKEL IFGLKNLPQP  480
KNDYQIVIQP LPEDDEEPEE KIEEDMSDRI AREKAEEEAR QQALLKKRSK VLQRELPRPP  540
PASLDLIRKS LMRADEDKSS FVPPTLIEQA DELVRKELLS LLEHDNIKYP LDEKATKEKK  600
XXXXXXXXXX XXXXXXXDSF EEDELKEADE FIKDEVQYLR IAMGHENESL DGYVEAHETC  660
LNDIMYFPTR DGFGLSSVAN HAEKLASLQN EFETVKVKMD DETKKAQRHE QKIKVLTNGY  720
LMRANKLWAQ VEATFKQMDT AGTELECFQA LKKQEVQAAT HRISNLWEEV QKQKDLERIL  780
QKRYGDLYTE LERVQHLMNA YRLQAEREQE TAARDDDIAM DGTVTSQGQS VAPDVEAPKE  840
EVAANNDIAM QDVDAEGQQA SKEVIAVEAE VDAAENQPVA TDFEASKEEG VGKETVEAEA  900
DEDKGVAPTT EPEGIQKEGD SIEANDTDET RGEGEVGTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027953799Cell division cycle 5-like protein
5xjc_L0.027953799Cell division cycle 5-like protein
5yzg_L0.027953799Cell division cycle 5-like protein
5z56_L0.027953799Cell division cycle 5-like protein
5z57_L0.027953799Cell division cycle 5-like protein
5z58_L0.027953799Cell division cycle 5-like protein
6ff4_L0.027953799Cell division cycle 5-like protein
6ff7_L0.027953799Cell division cycle 5-like protein
6icz_L0.027953799Cell division cycle 5-like protein
6id0_L0.027953799Cell division cycle 5-like protein
6id1_L0.027953799Cell division cycle 5-like protein
6qdv_O0.027953799Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084262.10.0cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A4D9B5R30.0A0A4D9B5R3_SALSN; Pre-mRNA-splicing factor CDC5/CEF1
STRINGMigut.F01544.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]