PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100093070201
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 414aa    MW: 44342.9 Da    PI: 8.4032
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100093070201genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.6e-131843227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                  +++ C +++rtG+C yGdrC+F+H++
  Ote100093070201|100093070201 18 DEPDCIYYLRTGFCGYGDRCRFNHPR 43
                                  6899********************96 PP
2zf-CCCH18.92.6e-066490227
                                  -S---SGGGGTS.--TTTTT-SS-SSS CS
                       zf-CCCH  2 ktelCrffartG.tCkyGdrCkFaHgp 27
                                  +++lC++++rtG    +G++Ck++H++
  Ote100093070201|100093070201 64 GEPLCQYYMRTGmXXXFGASCKYHHPK 90
                                  789**********************96 PP
3zf-CCCH32.81.2e-10111136227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++C+++ +tG+Ck+G +Ck++H++
  Ote100093070201|100093070201 111 GEKECSYYIKTGQCKFGVTCKYHHPQ 136
                                   6789********************97 PP
4zf-CCCH34.63.3e-11259285127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++++C++++rt  Ck+G++Ck++H+p
  Ote100093070201|100093070201 259 PGQPECQYYLRTRDCKFGSSCKYHHPP 285
                                   5789*********************97 PP
5zf-CCCH35.61.6e-11308331427
                                   ---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                   +lC+++a++G C++G++CkF H++
  Ote100093070201|100093070201 308 PLCSHYAQNGVCRFGPSCKFDHPM 331
                                   89********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1031644IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-61643IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-101843IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-72044IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-62243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5686291IPR000571Zinc finger, CCCH-type
SMARTSM003560.156290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995109137IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-4109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6110137IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7111136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018258286IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015258285IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8260285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5263285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084304332IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6304331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6305333IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-9308331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5309329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MWQLGLGEGP DSYPERPDEP DCIYYLRTGF CGYGDRCRFN HPRDRSAAMG AVRATGGEYP  60
ERDGEPLCQY YMRTGMXXXF GASCKYHHPK HGAGSSSPIT FNIYGYPMRQ GEKECSYYIK  120
TGQCKFGVTC KYHHPQPAGI QMPAPGVGPG PLSVPTPTLF PTVQSPSIQS SQQYGVLHGN  180
WPVGRPTMLP GSYVPGSYGP MLWSPYSAHV SPGTPQSTQP TVGAGPVYGI THLPPSSTTY  240
TGPYLSSSSQ KGHAFPDRPG QPECQYYLRT RDCKFGSSCK YHHPPEWSAQ KSIVLLSPMG  300
LPMRPAAPLC SHYAQNGVCR FGPSCKFDHP MRALSYSTST SSLTDMPVAP YPVGSTGATL  360
APSSSSSSDL RPEVVSGISK DALSSANSSS ASIGSAFSRS VPIPESSTGG SSSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090931.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-136C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D8YIZ00.0A0A4D8YIZ0_SALSN; Uncharacterized protein
TrEMBLA0A4D8Z2S60.0A0A4D8Z2S6_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459