PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100093070051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C3H | ||||||||
Protein Properties | Length: 450aa MW: 48301.2 Da PI: 7.476 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.5 | 9.5e-13 | 54 | 79 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yGdrC+F+H++ Ote100093070051|100093070051 54 DEPDCIYYLRTGFCGYGDRCRFNHPR 79 6899********************96 PP | |||||||
2 | zf-CCCH | 18.8 | 2.8e-06 | 100 | 126 | 2 | 27 |
-S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartG.tCkyGdrCkFaHgp 27 +++lC++++rtG +G++Ck++H++ Ote100093070051|100093070051 100 GEPLCQYYMRTGmXXXFGASCKYHHPK 126 789**********************96 PP | |||||||
3 | zf-CCCH | 32.6 | 1.3e-10 | 147 | 172 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +Ck++H++ Ote100093070051|100093070051 147 GEKECSYYIKTGQCKFGVTCKYHHPQ 172 6789********************97 PP | |||||||
4 | zf-CCCH | 34.4 | 3.7e-11 | 295 | 321 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rt Ck+G++Ck++H+p Ote100093070051|100093070051 295 PGQPECQYYLRTRDCKFGSSCKYHHPP 321 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.4 | 1.7e-11 | 344 | 367 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G C++G++CkF H++ Ote100093070051|100093070051 344 PLCSHYAQNGVCRFGPSCKFDHPM 367 89********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.103 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.2E-6 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-10 | 54 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-6 | 56 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-6 | 58 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.568 | 98 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.995 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.0E-4 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0015 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 296 | 321 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-5 | 299 | 321 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.084 | 340 | 368 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 340 | 367 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 341 | 369 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-9 | 344 | 367 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 345 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MERYSATEAM EPAAEWPGSG RETGLEGEFE FVNAEPMWQL GLGEGPDSYP ERPDEPDCIY 60 YLRTGFCGYG DRCRFNHPRD RSAAMGAVRA TGGEYPERDG EPLCQYYMRT GMXXXFGASC 120 KYHHPKHGAG SSSPITFNIY GYPMRQGEKE CSYYIKTGQC KFGVTCKYHH PQPAGIQMPA 180 PGVGPGPLSV PTPTLFPTVQ SPSIQSSQQY GVLHGNWPVG RPTMLPGSYV PGSYGPMLWS 240 PYSAHVSPGT PQSTQPTVGA GPVYGITHLP PSSTTYTGPY LSSSSQKGHA FPDRPGQPEC 300 QYYLRTRDCK FGSSCKYHHP PEWSAQKSIV LLSPMGLPMR PAAPLCSHYA QNGVCRFGPS 360 CKFDHPMRAL SYSTSTSSLT DMPVAPYPVG STGATLAPSS SSSSDLRPEV VSGISKDALS 420 SANSSSASIG SAFSRSVPIP ESSTGGSSSN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090931.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q84W91 | 1e-138 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A4D8YIZ0 | 0.0 | A0A4D8YIZ0_SALSN; Uncharacterized protein | ||||
STRING | Migut.G00186.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |