PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100092510021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 153aa    MW: 17641.9 Da    PI: 8.6534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100092510021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-052446123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ykC+ C+k F +   L  H+++H
  Ote100092510021|100092510021 24 YKCSFCSKEFVSAQALGGHMNVH 46
                                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-72151No hitNo description
Gene3DG3DSA:3.30.160.601.0E-42248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00282446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6972451IPR007087Zinc finger, C2H2
PfamPF139121.3E-72447IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEKMKRCCDG DWSSERDLWP QRIYKCSFCS KEFVSAQALG GHMNVHRRDR ARMRLYPNPN  60
PNPSFPKFSS AINEDGVIVP AIRHSSPHHV MALLGXXXXX XXXXXXXFED FTRNNDVRVY  120
KAKEFVGLDL NLGLIQDATX XXXXXXXXXX XXS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080293.12e-23transcriptional regulator SUPERMAN-like
TrEMBLA0A1S4BCM52e-21A0A1S4BCM5_TOBAC; transcriptional regulator SUPERMAN-like
TrEMBLA0A1U7XNJ22e-21A0A1U7XNJ2_NICSY; transcriptional regulator SUPERMAN-like
TrEMBLA0A2Z7AJ152e-21A0A2Z7AJ15_9LAMI; Transcriptional regulator SUPERMAN-like
STRINGXP_009788060.14e-22(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453