PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100090130021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C3H | ||||||||
Protein Properties | Length: 1102aa MW: 124471 Da PI: 6.4899 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 233 | 256 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +t +Cr+f G C+ Gd CkF+H+ Ote100090130021|100090130021 233 RTIPCRDFKI-GNCRWGDACKFSHD 256 5789******.*************7 PP | |||||||
2 | zf-CCCH | 19.4 | 1.8e-06 | 286 | 306 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ffa+ G C++ d+C+F+H+ Ote100090130021|100090130021 286 PLCKFFAA-GRCNR-DNCRFSHD 306 8***9999.*****.*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.986 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 149 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-6 | 231 | 257 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-6 | 231 | 257 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.798 | 231 | 258 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 234 | 256 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 282 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-5 | 283 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1102 aa Download sequence Send to blast |
MGERRNRKSF WDTEDGSKHV SGMREHNSWA GKDHHSSHGS GRYRDLSDSR ATSTRESRDH 60 SEWPPWESIE DPVAPMSRSF KNTYERKDVG GDKRYHKNIP PVYEEMEIHN YNHSHEYDRS 120 HSQRSSRSPI GDYRRQPYGW SDKRSGQEKL SQTCRDFAYG RCRKGSQCRF FHPDSVSRRD 180 GEFVEDDRLE SWRGRSDHGQ ISRHTYTRLG FESRNDMSDL YHGEDERYIN RSRTIPCRDF 240 KIGNCRWGDA CKFSHDDASA ESFGRDTRNT FFDKDFDHQQ FKNEKPLCKF FAAGRCNRDN 300 CRFSHDDPNL NTLEGRLDKV NDIKSSRDKN NWRNAPEWDD ATRISDAPMP AGWGDAIATN 360 STSAGDISDR DYSRFSHDDR DLNKLDGRLD KVTDSKSYWW NAPKWDDATR ISDAPMPTGW 420 GEAXXXXXXX XXIATNTTSA GAISNRDYSR FSHDDPNLNN LEGRLDKVTD SKSSHDKSYW 480 RNAPNWDDAT GISDAPVRTG WGEAIATNTT GAGDXXXXXX XXANMDYSRL SCDDSNLNSL 540 EGRLDKVTDS KSSHENNRRN APKWDDATRI SDAPMPTGCG EAISTNTAST CDITDGQSGD 600 KWGFKSKDDN KIWGIQEWAS KSLDCERQPS LPRENGSYGA DMGPANSFTK HNTPHKQDQS 660 HLQNKDWIVN LHGFSALQEN RSLNVPPAHF QQQQCGITSN PMSSCGSTVL DEVKDTRYTN 720 HSILLFGQSV NQNDTSTSPG HSSVANESDR GQNMLYTNLS NGLATDLNQP ETHMIKPLNV 780 QIPGQNDKNI VRSPSSVEAR VPQILINLLT NKLPDKVSNS QVTTAGQQVS PVRVPVSLPE 840 SFVNEHSQTS GVLDASNSRG MLPSLSCVNT STVQDNAHAV SLDQFNSMGN GREYTEPDNL 900 NLAQATDNQN NQMQGRSSSL SILDVPGDGK STGEESKGIL DNRPCENLDS QGKLEDGSAN 960 KDEKGMRLFK NSLVELVKEI LKPIWKEGRM SRDVHKTVVK KVVDKVSCTI QAEHIPKTQD 1020 KVDLYLSSSK PKITRLVQIY GGYKLTLNIH LITPTSPFEF GHRIETFALP CRHMWIVLEN 1080 QMLDHDIEYQ HTLCPDFVWF IA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G9H024 | 1e-120 | A0A2G9H024_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5255 | 20 | 29 |