PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100089430041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SBP

Protein Properties

Length: 112aa MW: 12742 Da PI: 7.5093

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100089430041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	97.8	9.3e-31	53	108	22	77
T--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 22 kvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 ++Ce+h+ka+vvl+sg +qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk++ Ote100089430041\|100089430041 53 HLCEFHAKAEVVLLSGSRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS 108 58****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	22.563	26	107	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-24	52	106	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.3E-20	53	94	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.16E-26	53	110	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
METSKEEGKR FVQVPELDDE GEDDEDTAGE DNKKKGALTP SKRRVSGAGG STHLCEFHAK 60 AEVVLLSGSR QRFCQQCSRF HELSEFDEAK RSCRRRLAGH NERRRKSSYD SH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-24	54	106	32	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096328.1	8e-42	squamosa promoter-binding protein 1
Swissprot	Q38741	9e-44	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A075FJ68	4e-48	A0A075FJ68_SALMI; SQUAMOSA promoter binding protein-like 15 (Fragment)
STRING	Migut.M01124.1.p	1e-36	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]