PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100087380061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 319aa    MW: 36236.9 Da    PI: 8.0796
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100087380061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36251172103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Ote100087380061|100087380061  25 FLTKTYQLVDDPTTDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 96 
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ Fkkg+k+ll++i+r+k++
  Ote100087380061|100087380061  97 NEFFKKGEKHLLCEIHRRKTA 117
                                   ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.67E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAVMLDNCDT ILLSLDSQKS VPAPFLTKTY QLVDDPTTDH IVSWGQDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
MAVGNHHHHA LPSSTFFPYP SRLSISPPDS DDNQPCNNWR DYSPPPPQNR GGDSLSALSE  180
DNERLRRNNS LLMSELAHMR KLYNDIIYFV QNHVKPVAPS NSYNSSLFLC NSSPPPANPV  240
SMASGQLNFL SPSCMKSPPS NINCEAANGE LYRTKLFGVP LPSKKRLHSE YNSSTTINKS  300
RLVIEKDDLG LNLMPPPQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-212111626131Heat shock factor protein 1
5d5v_B1e-212111626131Heat shock factor protein 1
5d5v_D1e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083880.11e-159heat stress transcription factor B-4-like
SwissprotQ9C6351e-114HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A4D9BD771e-153A0A4D9BD77_SALSN; Heat shock transcription factor, other eukaryote
STRINGVIT_18s0001g10380.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450