PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100082890031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 486aa    MW: 51763.3 Da    PI: 7.9053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100082890031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00077103125123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C+k +  +s+ k H + +
  Ote100082890031|100082890031 103 WKCNKCSKKYAVQSDWKAHSKIC 125
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.54E-599140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MNDSTASGDS SPGNQIDPKV TPKKKRNLPG MPGKGGNTSI DVFAVRRGHN LPWKLRQRSS  60
QDVKKRVYVC PELSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCNKCSK KYAVQSDWKA  120
HSKICGTKEY KCDCGTLFNR KDSFITHRAF CDVLAEESSK AQETAPPSNE DVPKISVVVX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXLPA QAPATEDSSP ADVASLVLPD LNPVVELLES  240
TKPNPTGAQM LEESPAMTYL AASNSSSTNS SSNGSSSSNV FASMFASSTS SETFPSQTAG  300
FSNFFRAIAR SDHTPNIVPS SSSEPMSLCL AVNQSSSIFG QERRQXXXXX XXXXXXPALS  360
ATALLQKAAQ IGPAASNASL LGGLGIVSSS SSSPSISHEW SRQHIESDGL GLGLACDSGS  420
GLKELMLGTP SVFGPKHTTL DLLGLGMAAS GGSTSGLSVL MTSVNGDLDV TTSTAFDGRE  480
FGGHDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3399160364Zinc finger protein JACKDAW
5b3h_F5e-3399160364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022870585.11e-172protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-121IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2Z7CCG61e-172A0A2Z7CCG6_9LAMI; Zinc finger protein NUTCRACKER
STRINGXP_009590472.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]