PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Ote100080930061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 320aa MW: 36250.3 Da PI: 9.5775

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100080930061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.9	2.2e-54	12	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeel+ +yLkkkv+ +++++ +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat Ote100080930061\|100080930061 12 VPPGFRFHPTDEELLYYYLKKKVSYEPIDF-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRAT 91 69**************************.9***********952444443456****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl Ote100080930061\|100080930061 92 AAGFWKATGRDKAIHMSNSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 141 **********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-55	9	148	IPR003441	NAC domain
PROSITE profile	PS51005	52.833	12	174	IPR003441	NAC domain
Pfam	PF02365	3.3E-28	13	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0010455	Biological Process	positive regulation of cell fate commitment
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MMAGGGNGGL SVPPGFRFHP TDEELLYYYL KKKVSYEPID FDVIREVDLN KLEPWDLKEK 60 CRIGSGPQNE WYFFSHKDKK YPTGTRTNRA TAAGFWKATG RDKAIHMSNS RRIGMRKTLV 120 FYTGRAPHGQ KTDWIMHEYR LDDDNAPHEI QVRRWMGDLQ SFQEEKPHTR IPPRGGSRRA 180 GCTFPRISWL YLGAQSEFRP QSRQFDASSA TDESGIRRSD VVSVVASXXX XXXCPQNVLR 240 LTSGGAGPSA GFIQQPEKIS GGGDWSFLDK LLATHQSMDQ ISKCQQFAQV AEMVPQATQR 300 FTFPYHGGLE SPADFSKFSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-45	10	141	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00250	DAP	Transfer from AT1G79580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095843.1	1e-130	protein SOMBRERO-like
Refseq	XP_011095844.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554180.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554181.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554182.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554183.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554184.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554185.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554186.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554187.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554188.1	1e-130	protein SOMBRERO-like
Refseq	XP_020554189.1	1e-130	protein SOMBRERO-like
TrEMBL	A0A2G9HTP4	1e-128	A0A2G9HTP4_9LAMI; Uncharacterized protein
STRING	XP_002521498.1	1e-115	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297