PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100076880061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YB

Protein Properties

Length: 122aa MW: 14177.3 Da PI: 9.3357

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100076880061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	147.6	2.6e-46	3	98	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 +eqd++lPianv+rimkk+lP akisk+ake +qec+sefi fvt+e sd+c +e+rkt+ng+d++wal++lGf++y +++ Ote100076880061\|100076880061 3 EEQDKLLPIANVGRIMKKILPPSAKISKEAKERMQECASEFICFVTGEGSDRCLKENRKTMNGEDICWALTSLGFDNYSDAMV 85 69******************************************************************************* PP NF-YB 85 vylkkyrelegek 97 yl++ re+++++ Ote100076880061\|100076880061 86 RYLQRLREFQRQR 98 *******9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-43	3	111	IPR009072	Histone-fold
SuperFamily	SSF47113	1.88E-34	5	102	IPR009072	Histone-fold
Pfam	PF00808	2.4E-23	9	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.4E-13	36	54	No hit	No description
PRINTS	PR00615	5.4E-13	55	73	No hit	No description
PRINTS	PR00615	5.4E-13	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MSEEQDKLLP IANVGRIMKK ILPPSAKISK EAKERMQECA SEFICFVTGE GSDRCLKENR 60 KTMNGEDICW ALTSLGFDNY SDAMVRYLQR LREFQRQRAN FNTINKEGAS QEIRMHKTKQ 120 IR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-37	4	93	3	92	Transcription factor HapC (Eurofung)
4g92_B	2e-37	4	93	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092666.1	7e-61	nuclear transcription factor Y subunit B-4
Swissprot	O82248	2e-45	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A022QNZ9	1e-55	A0A022QNZ9_ERYGU; Uncharacterized protein (Fragment)
TrEMBL	A0A2G9IB64	1e-55	A0A2G9IB64_9LAMI; Uncharacterized protein
STRING	Migut.N01995.1.p	5e-56	(Erythranthe guttata)
STRING	Migut.O00508.1.p	5e-56	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]