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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100073930041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GATA | ||||||||
Protein Properties | Length: 299aa MW: 32955 Da PI: 9.562 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 3e-19 | 162 | 195 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Ote100073930041|100073930041 162 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 195 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.3E-20 | 156 | 208 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.796 | 156 | 192 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-13 | 156 | 196 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.5E-16 | 160 | 195 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.27E-13 | 161 | 193 | No hit | No description |
Pfam | PF00320 | 6.0E-17 | 162 | 195 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 162 | 187 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MNLNSSSSHF PTHQISRDAD HELCRPHPLL QNRAPSVSCH FFFDPIQDHA KFYDHHEQYR 60 PNHVPDDQDY GGSTYEIKNK VDSGLKLGLW KKENDEGESM DNNNPMKWMS SKMRVMQKMK 120 HTDHDRAALK ITSSGDHKVQ PSSSDLSSNS SSYNNNSPIR VCSDCNTTKT PLWRSGPKGP 180 KSLCNACGIR QRKARRAMAA AADAAADGTT ANNSDESTLK IKLQHKGKLG KNGHASQLKK 240 RCKTAAAAAG SPAAGKKQLG FEDFLINLSK NLAFHRVFPD EEKDAAILLM ALSSGLVNG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078200.2 | 1e-105 | LOW QUALITY PROTEIN: putative GATA transcription factor 22 | ||||
TrEMBL | A0A4D9BZW7 | 1e-112 | A0A4D9BZW7_SALSN; Uncharacterized protein | ||||
STRING | Migut.J00606.1.p | 5e-72 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 |