PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100071740091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 460aa MW: 51934.4 Da PI: 5.3833

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100071740091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	96.8	2.2e-30	19	112	2	101
HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS HSF_DNA-bind 2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 Fl k+ye+ + ++sws + +sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+ w Ote100071740091\|100071740091 19 FLLKTYEMXXxxxXXXXDGIVSWSGSRKSFVVWNPPEFARVLLPSYFKHNNFSSFIRQLNTYGFRKVDPER---------W 90 99****9955556899**999**************************************999......... PP EEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 80 eFkhksFkkgkkellekikrkk 101 eF++++F k+kk+ll++i+r+k Ote100071740091\|100071740091 91 EFANEEFVKDKKHLLKNIHRRK 112 ********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.1E-48	15	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.0E-32	16	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.04E-28	16	111	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	7.9E-27	19	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-10	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-10	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MDGVASXXXX XXXXXPAPFL LKTYEMXXXX XXXXXDGIVS WSGSRKSFVV WNPPEFARVL 60 LPSYFKHNNF SSFIRQLNTY GFRKVDPERW EFANEEFVKD KKHLLKNIHR RKPIHSHSQP 120 QGSVDPERAA FEEEIDKLSR EKAALEGNLL GFKEQQSVAK VQLQDLTQRI GSMEQRQEKL 180 LSYLDKAVRN PEFVERLAQK LESMDFSAYN KKRRLPQAED VQLIQENVSV DNQSSCRPEF 240 DVSDQDFCNK LRLELSTAVS DGNLLSHSTQ SSNDDHMRTA GFVCPSETME LSDTGASLNL 300 KMDSSMSSPK LHSLHDSLTS NDEGDANLCL LNLSLACPLE LSKGQNTIGI PQSSAEICTS 360 SRPNIDNIDV SHQASSPADR TRPDETQMSS SPNVKKQGPV TEQKRVNDVF WEQFLTERPG 420 CSDTEEASSC YRANPYEEQE ERKSVKGVAG NTTGIEHLKL

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MDGVASXXXX XXXXXPAPFL LKTYEMXXXX XXXXXDGIVS WSGSRKSFVV WNPPEFARVL  60
LPSYFKHNNF SSFIRQLNTY GFRKVDPERW EFANEEFVKD KKHLLKNIHR RKPIHSHSQP  120
QGSVDPERAA FEEEIDKLSR EKAALEGNLL GFKEQQSVAK VQLQDLTQRI GSMEQRQEKL  180
LSYLDKAVRN PEFVERLAQK LESMDFSAYN KKRRLPQAED VQLIQENVSV DNQSSCRPEF  240
DVSDQDFCNK LRLELSTAVS DGNLLSHSTQ SSNDDHMRTA GFVCPSETME LSDTGASLNL  300
KMDSSMSSPK LHSLHDSLTS NDEGDANLCL LNLSLACPLE LSKGQNTIGI PQSSAEICTS  360
SRPNIDNIDV SHQASSPADR TRPDETQMSS SPNVKKQGPV TEQKRVNDVF WEQFLTERPG  420
CSDTEEASSC YRANPYEEQE ERKSVKGVAG NTTGIEHLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-16	36	111	43	129	Heat shock factor protein 1
5d5v_B	7e-16	36	111	43	129	Heat shock factor protein 1
5d5v_D	7e-16	36	111	43	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073785.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-133	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A4D8YKV4	0.0	A0A4D8YKV4_SALSN; Heat shock transcription factor, other eukaryote
STRING	Migut.N00424.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]