PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100071490011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 308aa MW: 35444.8 Da PI: 9.6254

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100071490011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.6	7.1e-37	31	122	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d ++ ++isws+ g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgFkk+++e+ weF+ Ote100071490011\|100071490011 31 FLTKTYDMVDDFTTAHIISWSRGGHSFVVWDPNSFSSTLLPRYFKHNNFSSFVRQLNTYGFKKIDSEK---------WEFA 102 9*************************************************************9998......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 +++F +g+k+ll++ikr+k Ote100071490011\|100071490011 103 NEEFLRGQKHLLRNIKRRKA 122 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	9.66E-35	27	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-57	27	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.6E-39	28	120	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.8E-32	31	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	31	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	70	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDPGFFQVKE EGSSSPPRPM EGLHEAAPPP FLTKTYDMVD DFTTAHIISW SRGGHSFVVW 60 DPNSFSSTLL PRYFKHNNFS SFVRQLNTYG FKKIDSEKWE FANEEFLRGQ KHLLRNIKRR 120 KAPPLPPPQP PSPPHAAVEI GLFGQDEEAQ LLKRDKHVLM NELVKLRQQQ QNTRLYLQEM 180 ELRLRGTEKK QQQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXDD DVSKKRLRLI 240 EAGETSRGDK GLNIIKTEFE EFCGPGGVSX XXXXXXXXXX XXXGSGNAAF GEGQDGGRRQ 300 RRLWERAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-24	29	120	27	129	Heat shock factor protein 1
5d5v_B	9e-24	29	120	27	129	Heat shock factor protein 1
5d5v_D	9e-24	29	120	27	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082584.2	9e-94	heat stress transcription factor A-7a-like
Swissprot	Q6VBB2	1e-76	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	A0A4D9BR34	2e-95	A0A4D9BR34_SALSN; Heat shock transcription factor, other eukaryote
STRING	POPTR_0002s04900.1	1e-85	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]