PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100070710161

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 487aa MW: 54180.9 Da PI: 5.1421

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100070710161	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.8	1.4e-36	16	108	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d++++ ++sws+n+nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+ Ote100070710161\|100070710161 16 FLSKTYDMVDDPATDAVVSWSKNNNSFVVWNVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFA 87 9**************************************************************999......... PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 ++ F +g+k+ll++i+r+k + Ote100070710161\|100070710161 88 NEGFLRGHKHLLKSINRRKAS 108 ****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.0E-39	9	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.36E-35	11	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.0E-61	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.9E-32	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-20	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-20	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-20	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MEAGGISTAA TAPPPFLSKT YDMVDDPATD AVVSWSKNNN SFVVWNVPEF ARDLLPKYFK 60 HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGHKHLLK SINRRKASHA QQALQQNIQL 120 QNPVVPSCIE VGKFGIEEEV ERLKRDKNLL MQELVRLRQQ QQTTDSQLQT VGQRVHVMEQ 180 RQQQMVSFLA KAMQSPGFVS QLVHQQNDSP RQISGANKKR RLPNQDEESL AHKFSITSPD 240 GQIIKYQPLM NEAAKAMLRQ ILKMNTSNRA ESKLSNPNGL FIDKAHSPSD LLDSSSSSNR 300 TSGVTLSEVL PNTSALSEVQ SSSGLTHAKA CSTFFPEAST GLPDFIPAQG ISPEKSLDLP 360 DGPFKGIEPA EFSSGDIIPR VVEAAMPPAP SNEILEDYDV DILLDDIHKL AGMNDDIHKL 420 PGINDVFWEQ FLPESPPVED TDEINNVDLG HESKDQLIEL EGELDRLRNM NSLTEQMGLL 480 ASAAKSG

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MEAGGISTAA TAPPPFLSKT YDMVDDPATD AVVSWSKNNN SFVVWNVPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGHKHLLK SINRRKASHA QQALQQNIQL  120
QNPVVPSCIE VGKFGIEEEV ERLKRDKNLL MQELVRLRQQ QQTTDSQLQT VGQRVHVMEQ  180
RQQQMVSFLA KAMQSPGFVS QLVHQQNDSP RQISGANKKR RLPNQDEESL AHKFSITSPD  240
GQIIKYQPLM NEAAKAMLRQ ILKMNTSNRA ESKLSNPNGL FIDKAHSPSD LLDSSSSSNR  300
TSGVTLSEVL PNTSALSEVQ SSSGLTHAKA CSTFFPEAST GLPDFIPAQG ISPEKSLDLP  360
DGPFKGIEPA EFSSGDIIPR VVEAAMPPAP SNEILEDYDV DILLDDIHKL AGMNDDIHKL  420
PGINDVFWEQ FLPESPPVED TDEINNVDLG HESKDQLIEL EGELDRLRNM NSLTEQMGLL  480
ASAAKSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-26	14	108	18	123	Heat shock factor protein 1
5d5u_B	4e-26	6	105	16	129	Heat shock factor protein 1
5d5v_B	4e-26	6	105	16	129	Heat shock factor protein 1
5d5v_D	4e-26	6	105	16	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844238.1	0.0	PREDICTED: heat stress transcription factor A-1
Swissprot	Q84T61	1e-160	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A4D9A0V0	0.0	A0A4D9A0V0_SALSN; Heat shock transcription factor, other eukaryote
STRING	Migut.F00088.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]