PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100070710151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 476aa    MW: 53807.4 Da    PI: 7.0356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100070710151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-17239282146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg++T eE+ ++++++++lG++ W++Ia +++ gRt++++k++w++
  Ote100070710151|100070710151 239 RGAFTDEEERIIIELHQKLGNK-WSAIAGYLP-GRTDNEIKNFWNT 282
                                   89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557296.91E-1414148IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.308.8E-1715148IPR016181Acyl-CoA N-acyltransferase
PROSITE profilePS5118610.65117201IPR000182GNAT domain
PfamPF005835.1E-669146IPR000182GNAT domain
CDDcd043012.97E-669146No hitNo description
SMARTSM0071728160235IPR001005SANT/Myb domain
PROSITE profilePS500904.762198233IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-12218245IPR009057Homeodomain-like
SuperFamilySSF466893.59E-23218290IPR009057Homeodomain-like
PROSITE profilePS5129427.064234288IPR017930Myb domain
SMARTSM007171.1E-16238286IPR001005SANT/Myb domain
PfamPF002495.8E-16239282IPR001005SANT/Myb domain
CDDcd001672.25E-12241284No hitNo description
Gene3DG3DSA:1.10.10.601.4E-22246285IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008080Molecular FunctionN-acetyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSNPSMVNIK VRRSSNIAYR PIQPSDLGVL EKIHGELFPI RYEAEFFHNV VNGHDIVSWG  60
AVDRSRPDER SNELIGFVTI RIMPVKESEI EDLLSFDLSR MDQTLVYILT LGVVDSYRNL  120
GIARSLIHEV MKYASSLSSC RAVYLHHYDS YLFVYYVNGG RSPCSPLELV TVFVTYARSG  180
LKSVAARLWK NDDRRISKWV KYKESGCLLP KRMMRNEGSR CGKSCRLRWT NYLRPDIKRG  240
AFTDEEERII IELHQKLGNK WSAIAGYLPG RTDNEIKNFW NTRLKKKLLL NGIDPDTHMP  300
RARFDTFLPG LPQLLSCNDT RNLAWENVAR SQVDVARLAK TILLGNILQL LSAGPSPPPL  360
PVENFSPGLE SARVMNGPPW DTSVMGLQSG LKDGHGPVFQ SAMDINSSEL GESSIMHADY  420
AVPDLVSASP ECFSRDQEPN CFISPTEFPD PPASSDALGD LMDDEARNYY WKQLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-231902889105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-231902889105C-Myb DNA-Binding Domain
1msf_C1e-231902889105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059PRR11e-121A0A059PRR1_SALMI; MYB-related transcription factor