PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100070040051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 331aa    MW: 36302.3 Da    PI: 8.3485
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100070040051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.81.2e-1517438108
                          GRAS  38 mqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIleaveg 108
                                   m+Rlaa+ft AL++ + +  s+++      p + +e++ + ++laa++l++++sP++kf+h+taNqaIleav +
  Ote100070040051|100070040051   1 MERLAACFTDALQSLIDGggSGKQGGGGGGPHQFKEEHhQNDVLAAFQLLQDMSPYVKFGHFTANQAILEAVTH 74 
                                   89***************9666666666667777666665999*****************************976 PP
2GRAS179.13.2e-55106325153374
                          GRAS 153 g..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                                   g  s  +++etg+rL+ fA+++g pf+f+    ++ e++++++L++ +gEal+Vn++l+l ++  +    ++ + ++L+  
  Ote100070040051|100070040051 106 GrrSFGTIQETGRRLTAFAASIGQPFSFHQCRLDADEAFRPSSLKLVRGEALVVNCMLHLPHFSYR---APDSIASFLSGA 183
                                   35566789**********************999999*************************99844...4444569***** PP

                          GRAS 232 kslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                                   ++l+Pk++++ve+e+   +++ F+ rf+++l+++sa++dslea++p +s++r+ vEr++lg++i   va   ++   ++e+
  Ote100070040051|100070040051 184 RTLNPKLITLVEEEMGPpSNGGFVGRFMDSLHHFSAVYDSLEAGFPMQSRARALVERVFLGPRIAGSVARIYRA--PDEEE 262
                                   ****************999**************************************************99988..78888 PP

                          GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                     +W ++l+++GF+p+++s  + +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+S W+
  Ote100070040051|100070040051 263 GYSWGHWLGAVGFRPMSISFANHCQAKLLLGLYN-DGYRVEELtSNKLVLGWKSRRLLSASIWT 325
                                   99*******************************9.******876999****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.3E-13174IPR005202Transcription factor GRAS
PROSITE profilePS5098531.1231305IPR005202Transcription factor GRAS
PfamPF035141.1E-52106325IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MERLAACFTD ALQSLIDGGG SGKQGGGGGG PHQFKEEHHQ NDVLAAFQLL QDMSPYVKFG  60
HFTANQAILE AVTHDRPGVA KRRAPDXXXX XXXXXXXTAV SRSGGGRRSF GTIQETGRRL  120
TAFAASIGQP FSFHQCRLDA DEAFRPSSLK LVRGEALVVN CMLHLPHFSY RAPDSIASFL  180
SGARTLNPKL ITLVEEEMGP PSNGGFVGRF MDSLHHFSAV YDSLEAGFPM QSRARALVER  240
VFLGPRIAGS VARIYRAPDE EEGYSWGHWL GAVGFRPMSI SFANHCQAKL LLGLYNDGYR  300
VEELTSNKLV LGWKSRRLLS ASIWTSQDGD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-32232557379Protein SCARECROW
5b3h_A1e-32232556378Protein SCARECROW
5b3h_D1e-32232556378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069635.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-154NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2G9H2700.0A0A2G9H270_9LAMI; Uncharacterized protein
STRINGEOY162271e-172(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]