PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100070040011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 176aa MW: 19103.4 Da PI: 4.6579 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 121.8 | 8.5e-38 | 27 | 143 | 29 | 141 |
GRAS 29 elaspdg.dpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIlea 105 el+sp++ ++m+Rlaa+ft AL++ + + s+++ p + +e++ + ++laa++l++++sP++kf+h+taNqaIlea Ote100070040011|100070040011 27 ELVSPNDgTNMERLAACFTDALQSLIDGggSGKQGGGGGGPHQFKEEHhQNDVLAAFQLLQDMSPYVKFGHFTANQAILEA 107 44555444*******************9666666666667777666665999***************************** PP GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141 v +++rvHi+D+di++G+QW++L+qaL sR++gpp+ Ote100070040011|100070040011 108 VTHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPT 143 *********************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.273 | 1 | 176 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-35 | 27 | 143 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MMDENVALQQ QSIHELNQEY NNLSPEELVS PNDGTNMERL AACFTDALQS LIDGGGSGKQ 60 GGGGGGPHQF KEEHHQNDVL AAFQLLQDMS PYVKFGHFTA NQAILEAVTH DRRVHIVDYD 120 IMEGIQWASL MQALVSRKDG PPTXXXXXXX XXXXQQSREA GAGAGPSAPS KKPDGA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-21 | 18 | 142 | 36 | 158 | Protein SCARECROW |
5b3h_A | 6e-21 | 18 | 142 | 35 | 157 | Protein SCARECROW |
5b3h_D | 6e-21 | 18 | 142 | 35 | 157 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069635.1 | 7e-65 | nodulation-signaling pathway 2 protein | ||||
Swissprot | Q5NE24 | 7e-41 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A2G9H270 | 5e-63 | A0A2G9H270_9LAMI; Uncharacterized protein | ||||
STRING | EOY16227 | 7e-59 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12241 | 19 | 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|