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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100066380011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ERF | ||||||||
Protein Properties | Length: 136aa MW: 15268 Da PI: 5.036 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.3e-20 | 21 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +gr++AeIrd + + r++lg+f taeeAa+a+++a+ ++g Ote100066380011|100066380011 21 KFRGVRRRP-WGRFAAEIRDS---NrQGVRVWLGTFATAEEAARAYDRAAYTMRG 71 89*******.**********4...3345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.56E-18 | 20 | 79 | No hit | No description |
PROSITE profile | PS51032 | 23.314 | 21 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-15 | 21 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-31 | 21 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 21 | 81 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-34 | 21 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MMDETPRDTA HQQGKDGGEA KFRGVRRRPW GRFAAEIRDS NRQGVRVWLG TFATAEEAAR 60 AYDRAAYTMR GPLAVLNFPQ EYLQPPLPPS SSSTAAASSS MIKNEVEQGK EVLEFECLDD 120 KLLEDLLEYG ERNTSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-32 | 2 | 122 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023733438.1 | 4e-46 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 4e-39 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A4D9AVX7 | 2e-50 | A0A4D9AVX7_SALSN; Pathogenesis-related proteins transcriptional activator PTI5 | ||||
STRING | XP_010039174.1 | 6e-45 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Publications ? help Back to Top | |||
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