PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Ote100065760051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 167aa MW: 18804.4 Da PI: 8.6001

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100065760051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.2	7e-12	43	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +++++G g W+tI + R+ ++k++w+++ Ote100065760051\|100065760051 43 KQKWTSEEEAALKAGIQKYGIGKWSTILKDPEfstflRSRSNVDLKDKWRNL 94 79************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.33E-16	40	97	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-6	42	97	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-7	43	94	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-15	43	94	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	43	95	IPR017877	Myb-like domain
CDD	cd11660	2.70E-21	44	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MCYMDCLLFN VRILQLERWN GNLHCSLGDC CERFGVYVMG APKQKWTSEE EAALKAGIQK 60 YGIGKWSTIL KDPEFSTFLR SRSNVDLKDK WRNLNCMANG LGSRHRARVP SKNHQLTPKQ 120 DEDTKASGMV VEKETDVLSA STLATSSETS HDAGSKKKIS RLEDMLS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854030.1	1e-66	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_012854037.1	1e-66	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_012854044.1	1e-66	PREDICTED: telomere repeat-binding factor 1-like
Swissprot	Q8VWK4	2e-32	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A2G9H8J9	6e-66	A0A2G9H8J9_9LAMI; Uncharacterized protein
STRING	Migut.H00343.1.p	5e-66	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5122	22	35

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]