PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100064420011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TCP
Protein Properties Length: 331aa    MW: 37386.5 Da    PI: 6.1836
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100064420011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.77.6e-33104176166
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 
                                   a+g+kdrhsk+ T++g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l ++       s
  Ote100064420011|100064420011 104 ATGRKDRHSKVRTARGPRDRRVRLSPTTAIQFYDVQDRLGYDRPSKAIDWLINEAKTAIDALEQQpsfklkdS 176
                                   589************************************************************9943322220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-30105170IPR005333Transcription factor, TCP
PROSITE profilePS5136931.841107165IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSAPINQIQS PDDEDEDQTD LVDDCKNNDS AIKEPVPESF LNYYNHDLGK PQDFACFEAV  60
PAASNPLKFK YERVIKEGLD SASPKMKAKK RTAEVVDGGR VVRATGRKDR HSKVRTARGP  120
RDRRVRLSPT TAIQFYDVQD RLGYDRPSKA IDWLINEAKT AIDALEQQPS FKLKDSNVVE  180
NHSTPPILNH DYVSLTQCGM RENLKWNDDN LSCFVDEVYL HQDLRNTSEI NIYPNSCSAL  240
NTTTKILETN WEMTTLQKMF AWNRGYESIR GGGAEYSSGN TLPISGHFNL YSHREPLQSS  300
DVSNSDFSGF NFSNDLSKIA ASAAKKQDKK F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-18112165154Putative transcription factor PCF6
5zkt_B1e-18112165154Putative transcription factor PCF6
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087013.15e-85transcription factor TCP4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145