PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100063560011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 301aa MW: 33177.4 Da PI: 8.4838

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100063560011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.3e-30	131	190	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Ote100063560011\|100063560011 131 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 190 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.9E-33	116	192	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-28	124	192	IPR003657	WRKY domain
PROSITE profile	PS50811	29.184	126	192	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	131	191	IPR003657	WRKY domain
Pfam	PF03106	1.8E-27	132	190	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MRMNRMKEEN KMLRSAVEQT MKDYTYLKAK MSILIQRNKD DTVEDCCRRS IDHHHHHSNQ 60 TVPSQSNKEE DELGLCLGLQ RSSSEVEAEG MKKYMAQVQS QSNTGTLSNI SSPPNKRARV 120 SVRARCEAAT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI 180 TTYEGTHNHP LPVGATAMAS TASSLNNNPF SMLTTPNFGT LNHDPGRGIV VDLSSSSPKE 240 DEENNVSAIA ADPKFRVAVA AAISSLINKE KQPMPTHHLL VNGDGSVSSR DINASILDSG 300 N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-23	121	192	7	77	Probable WRKY transcription factor 4
2lex_A	6e-23	121	192	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019447555.1	4e-89	PREDICTED: probable WRKY transcription factor 9 isoform X1
Swissprot	Q9C9F0	2e-70	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A0D5Y9A1	5e-95	A0A0D5Y9A1_SALMI; WRKY protein
STRING	VIT_12s0055g00340.t01	4e-80	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7287	21	29