PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100062210041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | SBP | ||||||||
Protein Properties | Length: 229aa MW: 25532 Da PI: 8.4073 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 115.9 | 2.2e-36 | 17 | 94 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls +++yhrrhkvCe+hsk+p g+eqrfCqqCsrf +l efDe+krsCr+rL++hn+rrrk+q+ Ote100062210041|100062210041 17 CLVDGCSADLSLCRDYHRRHKVCEAHSKTPXXXxXXGREQRFCQQCSRFQSLVEFDEGKRSCRKRLDGHNRRRRKPQP 94 *****************************98763789**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-28 | 13 | 79 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.385 | 14 | 92 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.92E-33 | 15 | 95 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-27 | 17 | 91 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MESSSKRAKP LGSIAHCLVD GCSADLSLCR DYHRRHKVCE AHSKTPXXXX XXGREQRFCQ 60 QCSRFQSLVE FDEGKRSCRK RLDGHNRRRR KPQPSESLPR TTGLDFSTQN YSKLVSFDTP 120 QMLGGASYSL WSHETANNHQ LNYVGAAIQQ GSSFVDPNAT TRMLPQVVEC DGALSLLSSS 180 PSPRVMDSVG YGVGVGQYES KAATSHFPEM FEHAPQGSST HQTLSFMWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-24 | 17 | 91 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022885332.1 | 5e-58 | teosinte glume architecture 1-like | ||||
Refseq | XP_022885337.1 | 5e-58 | teosinte glume architecture 1-like | ||||
Refseq | XP_022885345.1 | 5e-58 | teosinte glume architecture 1-like | ||||
Refseq | XP_022885354.1 | 5e-58 | teosinte glume architecture 1-like | ||||
Refseq | XP_022885362.1 | 5e-58 | teosinte glume architecture 1-like | ||||
Refseq | XP_022885372.1 | 5e-58 | teosinte glume architecture 1-like | ||||
Refseq | XP_022885384.1 | 5e-58 | teosinte glume architecture 1-like | ||||
TrEMBL | A0A2G9FXF5 | 3e-65 | A0A2G9FXF5_9LAMI; Uncharacterized protein | ||||
STRING | XP_009621034.1 | 5e-55 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4920 | 20 | 37 |