PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100059681051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 339aa    MW: 37844.6 Da    PI: 4.8594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100059681051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS25.71.3e-0879128150
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALa 50 
                                   l++lLl +A+ v++++ + a + L +l ++as +gd++qR+aayf+ +L 
  Ote100059681051|100059681051  79 LIHLLLIAATSVDENNPNPAIENLIELYQTASLAGDSVQRVAAYFADGLV 128
                                   689********************************************996 PP
2GRAS160.11.9e-4912931997291
                          GRAS  97 taNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfA 169
                                   + NqaIlea+e++      +++H+iDfd+ +G+QWp+L+q+L+++++++    l+iTg gs     +eel+et++rLa+fA
  Ote100059681051|100059681051 129 APNQAILEAFEQQektnntSALHVIDFDVLYGFQWPSLMQSLSEKAASASriLLKITGYGS----CAEELHETQSRLASFA 205
                                   56*********99666666667***********************955443489*******....**************** PP

                          GRAS 170 eel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                   + + +++fef+ +    +   +l + ++k+gE +a nlv+ l +      s ++ ++e+L+ + sl+P + v+veqe ++ 
  Ote100059681051|100059681051 206 KGFrNLSFEFDGI----VRGSNLAKPKIKKGEIVAANLVFYLSSSS----SFAK-ISETLNYLHSLNPSIAVLVEQEGSRK 277
                                   *9758*******7....33344566689************888775....4444.568*********************** PP

                          GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellg 291
                                   +++Fl rf+e+l+yy+a+fdsl+  lp +s+er  +E+  lg
  Ote100059681051|100059681051 278 THNFLSRFMESLHYYAAIFDSLDDCLPLDSSERLRIEKNHLG 319
                                   *************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.7611339IPR005202Transcription factor GRAS
PfamPF035144.6E-679128IPR005202Transcription factor GRAS
PfamPF035146.7E-47129319IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEGFDDEDES LCLRLAIAGC GRERKRKRVP TPDLSYSSNQ SYEEESKILS LFQTRDQMLK  60
LDQKREDQDS DEDGKGLHLI HLLLIAATSV DENNPNPAIE NLIELYQTAS LAGDSVQRVA  120
AYFADGLVAP NQAILEAFEQ QEKTNNTSAL HVIDFDVLYG FQWPSLMQSL SEKAASASRI  180
LLKITGYGSC AEELHETQSR LASFAKGFRN LSFEFDGIVR GSNLAKPKIK KGEIVAANLV  240
FYLSSSSSFA KISETLNYLH SLNPSIAVLV EQEGSRKTHN FLSRFMESLH YYAAIFDSLD  300
DCLPLDSSER LRIEKNHLGA LSLGWQEKLL LTASSWCCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-24633183296Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853343.11e-136PREDICTED: scarecrow-like protein 23
TrEMBLA0A4D8Z7U51e-146A0A4D8Z7U5_SALSN; Uncharacterized protein
STRINGMigut.N03341.1.p1e-135(Erythranthe guttata)