PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100058080011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 926aa    MW: 102112 Da    PI: 6.621
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100058080011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1308.4e-41152229178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +Cqv++C++dls ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefD++krsCrrrLa+hn+rrrk+q+
  Ote100058080011|100058080011 152 MCQVDDCKEDLSAAKDYHRRHKVCEVHSKAGKALVGNQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNRRRRKTQP 229
                                   6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-34146214IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.778150227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37151230IPR004333Transcription factor, SBP-box
PfamPF031104.0E-30153226IPR004333Transcription factor, SBP-box
PROSITE profilePS500888.549899926IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MEDVGAQVAS PVVIHQTLPQ RFCNTHPIVK KRSVPFYSSS FHYKNPSDNW DPKSWDWDSS  60
RFIARPLQRD RDQVTGGSHV SPHLPRSKEA DKGASTPAED QIKKDAENLR LMLGGGEQQA  120
ASNMNVMEEP HPVSRPSKRV RSGSPGNSNR PMCQVDDCKE DLSAAKDYHR RHKVCEVHSK  180
AGKALVGNQM QRFCQQCSRF HPLSEFDDGK RSCRRRLAGH NRRRRKTQPE DATPQVSVPG  240
AVHNDINCDV DVINLLAALA RPQGNPEDKN AKSSSIPDKD HLVQILSKIN SLPLPAILAS  300
KLPHLKTTSG SVSDHGHSEN QEQMSANASS PSTMDLLAGL SGNSGVPSDA LEVQWQLNTE  360
RSKSEKSKSP YVDDAARPDF QKGSMELPSA RCERSSTSCQ HSPMEEVECH APDTSPSLHL  420
QLFSSSSEDS RKLSLNANYL SSNSSNVSHE ISPTSSPPLV HNLFPMRTSR EKMDSHLSNS  480
EDELAHVKPS MSNGCSTSLC LFGGSIQPVE HGSIQSSPCQ AGYTSSSGSD HSPSSLNSDA  540
QDRTGRIIFK LFDKDPSHLP GSLRSQIFNW LSNSPSEMES YIRPGCIVIQ LYLSMPLYAW  600
DRLEENFVDC ISSLVKGIDA SFWANGRFLV CTDRQMASHK DGLATPELLS VSPVAVVAGQ  660
ETSLMLRGRS LTAPGTKVHC THADGYNITE VQASMCRDTA LDEINVCGFK ISGTGSNMLG  720
RCFIEVENSI RGTTFPVIIA DKPICHELRL LEPQINATAE VGNDIPTDHL QNTGRSWSRE  780
VVLHFLDELG WLFQRKRNST LFGGPDYRLS RFKFLLTFAI EHDFCALVKT LLDILLELXX  840
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXVHYSVI DPDDGLEKYI FAPNLAGPGG  900
LTPLHLAACS TSSDDIVAAL ISDPQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31143226184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083361.10.0squamosa promoter-binding-like protein 14
TrEMBLA0A075FFL70.0A0A075FFL7_SALMI; SQUAMOSA promoter binding protein-like 1 (Fragment)
STRINGMigut.C00339.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128871219