PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100055720001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 407aa    MW: 46085.8 Da    PI: 8.6856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100055720001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.72.6e-15325350126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ +++tG C+yG++C+FaHg
  Ote100055720001|100055720001 325 FKTELCNKWQQTGSCPYGENCQFAHG 350
                                   79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-19319356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-11321356IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-9324351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.615324352IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-12325350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-10358391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7359393IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031362389IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53362390IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEKQSVTARV GFPNFTSMLR RKQQSECIKA LLVLHPLQLS LSLIRCFQDQ FEAFLRSLIA  60
NRISKSLQPS SSRRIHMHQR LXXMQREISI SSHEDPSLSI LPFTGEYDCA PSMCFSISPS  120
EQYSSSIQDY LNDGSSNFSS MENEDALAPR LPQFQQQLLN QDLVNRHRTV LLHLRDVVKQ  180
VQTLRQENVN LKMANLDLNN QLNFLLKPAP FHGLDVDPGL SSLMNNLQKV NVEEEQTSEN  240
EVTTRSPTSV MDSGQGGLGG PERVHLPKSI SVRSNGYLKP VRASGSGEKG AKPTNQNNGR  300
TQKVYIKGGK KEQAVELEVY NQGMFKTELC NKWQQTGSCP YGENCQFAHG VEELRPILRH  360
PRYKTEVCRM VLDGVPCPYG HRCHFRHALT EQEQLLRAMN SNSVQPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-22325391470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076170.11e-134zinc finger CCCH domain-containing protein 15
RefseqXP_011076178.11e-134zinc finger CCCH domain-containing protein 15
RefseqXP_011076187.11e-134zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-64C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A4D9BJ471e-142A0A4D9BJ47_SALSN; Butyrate response factor 1
STRINGMigut.L01008.1.p1e-133(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228