PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100047670021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 551aa MW: 63055.9 Da PI: 7.836

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100047670021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.2	8.7e-11	34	67	23	56
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRakek 56 + + +++r++L+++lgL+++q+k+WFqN+R++ k Ote100047670021\|100047670021 34 QQLEENQRQQLSRELGLDQKQIKFWFQNKRTQIK 67 67899*************************9877 PP
2	START	144	1.4e-45	211	428	5	206
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 +a++elv + ++ep+Wvks + +d + + f++s+ + e +++sg v m+++ l e lld++ +W+ ++ Ote100047670021\|100047670021 211 AATNELVELLRVNEPLWVKSTtdgrYTLHRDSYDKLFPRSNHlkttsARFESSKDSGEVAMAAMHLIEMLLDVN-KWKDMF 290 7899***************6665555666666666665559999999*********************.** PP S....EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS START 77 a....kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149 + ka+t+evi++ g lqlm+ + lsplv+ R+f f+Ry+rql+ +w+ vdvS d ++ + + +R+ +lp Ote100047670021\|100047670021 291 PtivsKAKTIEVIETSslgGLLQLMYEKRHILSPLVApREFFFIRYCRQLNSSSWIMVDVSYDFLKELQ-AAAPMRSWKLP 370 ***********9999*************99*************************99.9****** PP EEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 150 Sgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 Sg++i+++sng+s+vtw+ehv +++++ h ++r lv sg+a ga++w tl+r ce+ Ote100047670021\|100047670021 371 SGCMIQDMSNGKSTVTWIEHVQVDDKSLtHRMYRDLVCSGQAYGARRWITTLKRMCER 428 ********************99988*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.82E-11	10	70	IPR009057	Homeodomain-like
SMART	SM00389	2.5E-4	21	73	IPR001356	Homeobox domain
CDD	cd00086	2.60E-8	22	70	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.7E-9	32	76	IPR009057	Homeodomain-like
Pfam	PF00046	2.9E-8	33	67	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.726	40	69	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	44	67	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.397	198	431	IPR002913	START domain
SuperFamily	SSF55961	1.17E-29	201	429	No hit	No description
CDD	cd08875	1.59E-97	202	427	No hit	No description
SMART	SM00234	7.0E-34	207	428	IPR002913	START domain
Pfam	PF01852	1.9E-37	211	428	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.6E-8	251	398	IPR023393	START-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MNSSNGGNGS GEEEVYNTQR GKKQYHRHST QQIQQLEENQ RQQLSRELGL DQKQIKFWFQ 60 NKRTQIKAQN EKADNNALRA ENEKIHFENL AMQEALRSII CPACNGNGAS LGEEEKTHIL 120 QRLRMENARL KEEYQQTMDF FSNYMGNPTM PLPAIEPFTE KPGKHVLNEG MGVNPLDLGQ 180 IHRNSENLIS PHDSAGIQEQ DKSILIEAAC AATNELVELL RVNEPLWVKS TTDGRYTLHR 240 DSYDKLFPRS NHLKTTSARF ESSKDSGEVA MAAMHLIEML LDVNKWKDMF PTIVSKAKTI 300 EVIETSSLGG LLQLMYEKRH ILSPLVAPRE FFFIRYCRQL NSSSWIMVDV SYDFLKELQA 360 AAPMRSWKLP SGCMIQDMSN GKSTVTWIEH VQVDDKSLTH RMYRDLVCSG QAYGARRWIT 420 TLKRMCERFA FSMGLATRPK HELEGVISSL EGQRNVMKLS HRMVKMFCEV LSMSDKIDFP 480 QLSDQNSGVR VSLRRSNGAG QPEGFIVSAA TSLWLPLSKD DLFNFFKDEK KRVEPFVPEE 540 KKMVMLQESS I

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MNSSNGGNGS GEEEVYNTQR GKKQYHRHST QQIQQLEENQ RQQLSRELGL DQKQIKFWFQ  60
NKRTQIKAQN EKADNNALRA ENEKIHFENL AMQEALRSII CPACNGNGAS LGEEEKTHIL  120
QRLRMENARL KEEYQQTMDF FSNYMGNPTM PLPAIEPFTE KPGKHVLNEG MGVNPLDLGQ  180
IHRNSENLIS PHDSAGIQEQ DKSILIEAAC AATNELVELL RVNEPLWVKS TTDGRYTLHR  240
DSYDKLFPRS NHLKTTSARF ESSKDSGEVA MAAMHLIEML LDVNKWKDMF PTIVSKAKTI  300
EVIETSSLGG LLQLMYEKRH ILSPLVAPRE FFFIRYCRQL NSSSWIMVDV SYDFLKELQA  360
AAPMRSWKLP SGCMIQDMSN GKSTVTWIEH VQVDDKSLTH RMYRDLVCSG QAYGARRWIT  420
TLKRMCERFA FSMGLATRPK HELEGVISSL EGQRNVMKLS HRMVKMFCEV LSMSDKIDFP  480
QLSDQNSGVR VSLRRSNGAG QPEGFIVSAA TSLWLPLSKD DLFNFFKDEK KRVEPFVPEE  540
KKMVMLQESS I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085930.1	0.0	homeobox-leucine zipper protein ROC8 isoform X1
TrEMBL	A0A4D9AJQ2	0.0	A0A4D9AJQ2_SALSN; Homeobox-leucine zipper protein
STRING	Migut.H02245.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2490	23	51