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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100043030001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26151.5 Da PI: 9.5741 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.2 | 1.9e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC++e + i++s+ Ote100043030001|100043030001 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIESCAIVYSP 50 89**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.35E-19 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.03 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-18 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IESCAIVYSP YESQPDXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXKAAD QLKKLYKDNR 120 EKEITHLMYQ CLTGKGLNGL PIPDLNDMGW MLDHSLKEIY KRIDGLKKAA APAEEKRGQH 180 QWFQEWMGNA SEQPQQTGGV HGGGGGDEII VPFSDGNNHS AAMWFNAFFP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088101.1 | 1e-71 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2G9GXU4 | 8e-68 | A0A2G9GXU4_9LAMI; MADS box transcription factor | ||||
STRING | Migut.B00884.1.p | 2e-65 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |