PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100040360211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 27173.4 Da PI: 9.4061 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.3e-06 | 35 | 58 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++Gd C+F H Ote100040360211|100040360211 35 KSKPCTKFFSTSGCSFGDACHFQH 58 7789*******************9 PP | |||||||
2 | zf-CCCH | 18.7 | 3.2e-06 | 105 | 118 | 14 | 27 |
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 C+yGd+C+FaHg+ Ote100040360211|100040360211 105 GCRYGDKCHFAHGE 118 5***********96 PP | |||||||
3 | zf-CCCH | 31.6 | 2.7e-10 | 217 | 241 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k +lC f++ G C +GdrC+FaH+ Ote100040360211|100040360211 217 FKKRLCEKFSK-GLCTFGDRCHFAHS 241 699********.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.967 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.87 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-6 | 34 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-6 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.45 | 41 | 58 | No hit | No description |
SuperFamily | SSF90229 | 4.08E-8 | 90 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-13 | 90 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.17 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.277 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.018 | 106 | 117 | No hit | No description |
SMART | SM00322 | 2.2E-8 | 115 | 189 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.5E-13 | 130 | 188 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 1.4E-12 | 130 | 192 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 8.8E-9 | 131 | 185 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.56E-12 | 131 | 184 | No hit | No description |
PROSITE profile | PS50084 | 12.244 | 133 | 184 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-13 | 214 | 246 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-8 | 215 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 216 | 242 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.643 | 217 | 243 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-8 | 217 | 241 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDFGRKRGRP DAAGNGGFKR SKEEMDSFTT GVGSKSKPCT KFFSTSGCSF GDACHFQHYV 60 PGYNAHTQLA NLGGNNLGGR SSSISDSPAP TMKTKICNRI NTPEGCRYGD KCHFAHGEME 120 LNKPNNPNAA FAGPIIGKNG ANSKQICRQT GVKLSIKDHE TDPSQRNIEL EGTFDQIKEA 180 SSMVRHLIMN LNTSSGQGHL ENRHVGSFGR GAAPSHFKKR LCEKFSKGLC TFGDRCHFAH 240 SASELRNSLD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087061.1 | 1e-130 | zinc finger CCCH domain-containing protein 14 isoform X1 | ||||
Swissprot | Q7F8R0 | 8e-81 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A022QHP9 | 1e-121 | A0A022QHP9_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B01362.1.p | 1e-122 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |