PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100039810081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | Trihelix | ||||||||
Protein Properties | Length: 241aa MW: 27221.5 Da PI: 5.9148 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.2 | 6.1e-25 | 34 | 116 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W+ qe+++ + +r e++ ++ ++k++k lWe +s++m+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p+ Ote100039810081|100039810081 34 QWSIQETRDFLMIRAELDPNFMETKRNKLLWEVISARMKEKGYNRSAEQCKCKWKNLVTRYKGCETMETEA---MRQQFPF 111 7********************************************************************85...56689** PP trihelix 82 fdqle 86 +++l+ Ote100039810081|100039810081 112 YNELQ 116 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.364 | 27 | 91 | IPR017877 | Myb-like domain |
CDD | cd12203 | 9.72E-27 | 33 | 98 | No hit | No description |
Pfam | PF13837 | 1.3E-20 | 34 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDHGXXXXXX XXXXYXXXXX XXXXXXXXXX RFPQWSIQET RDFLMIRAEL DPNFMETKRN 60 KLLWEVISAR MKEKGYNRSA EQCKCKWKNL VTRYKGCETM ETEAMRQQFP FYNELQTIFA 120 TRMQRMLWLE AEGSGGGATS SKKKTPAQFS SXXXXXXXXX XXXXPPKKKR RAKAAXXXXX 180 XXXXXXXXXE SDGGGTEGDD GGIHEAANAG GNAVDEGVRR EGGGEESEGD GVEADNGGVG 240 E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SDW0 | 5e-52 | TGT3A_ARATH; Trihelix transcription factor GT-3a |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |