PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100038400081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 528aa    MW: 59407.3 Da    PI: 8.5177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100038400081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.6e-1617991199
                                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                            B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                                  + s rl +p +f++ ++g++  + t +l  +sg+ W v+li     +++++ +GW +Fvk++ L++gD++vF++dg+ +f  +
  Ote100038400081|100038400081 17 FCSERLNIPCNFVKYMEGVS--PGTAVLVGPSGNIWFVNLIL--AENGFFFIDGWADFVKDHFLEDGDSIVFRYDGDLNF--T 93
                                  66889********7668885..559***************55..555589999*********************997777..8 PP

                                  EEEE-S CS
                            B3 94 vkvfrk 99
                                  ++vf++
  Ote100038400081|100038400081 94 LQVFDR 99
                                  888887 PP
2B353.16e-172343151498
                                   T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                            B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                    +  +p +fa+e+   ++++++++l++++g sW+v+ i  +k + ++++ +GW +Fv++n+++ gD+++F+l++  +fel 
  Ote100038400081|100038400081 234 FLKNVPYQFATEYL--PKCKVKIVLRNLKGDSWTVNSIPtTKVQTSHTFCGGWLSFVRDNNIDIGDICIFELMQ--KFELQ 310
                                   55679********6..44999****************875666666*************************987..9999* PP

                                   EEEE- CS
                            B3  94 vkvfr 98 
                                   v+++r
  Ote100038400081|100038400081 311 VRILR 315
                                   *9998 PP
3B348.91.1e-15424509997
                                   HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                            B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                   + + s  l +p +f  eh   ++++++++l++++g+ W+v+ i + k ++ +++ +GW  Fv++n+++ gD+++F+l+g+ 
  Ote100038400081|100038400081 424 NISGSYTLKIPYQFSMEHL--PNCKTEIVLQNLNGQCWTVNSIPTLKVQTlHTFCGGWMAFVRDNDIQMGDICIFELVGKC 502
                                   555566799*****99996..45899****************8866666679999**********************9944 PP

                                   EE..EEEEE CS
                            B3  89 efelvvkvf 97 
                                   e  ++v+++
  Ote100038400081|100038400081 503 E--MRVHIC 509
                                   4..588887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-205102IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-17798No hitNo description
PROSITE profilePS5086313.697100IPR003340B3 DNA binding domain
SMARTSM010192.9E-129100IPR003340B3 DNA binding domain
PfamPF023621.4E-131999IPR003340B3 DNA binding domain
SMARTSM010191.1E-10227317IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-19229316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-19229315IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-14235315IPR003340B3 DNA binding domain
CDDcd100172.95E-13238315No hitNo description
PROSITE profilePS5086311.857238317IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-24411510IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-22411509IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-20414509No hitNo description
SMARTSM010191.6E-13416512IPR003340B3 DNA binding domain
PfamPF023627.4E-13416509IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633416512IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MWNLRRPHFL LGFDPSFCSE RLNIPCNFVK YMEGVSPGTA VLVGPSGNIW FVNLILAENG  60
FFFIDGWADF VKDHFLEDGD SIVFRYDGDL NFTLQVFDRS MCEKPGAFTA QSSQDLSKFD  120
SNVVKKRERE RSALLDSIIE GVPKKMRCSQ LQPTNSVSDA HENTNLVSVE DWMPQADGNN  180
NMKNAITIAL PLAAVPRDYA DPSVRSRASK LDMLLSASEA ERIAQSFKSS FPSFLKNVPY  240
QFATEYLPKC KVKIVLRNLK GDSWTVNSIP TTKVQTSHTF CGGWLSFVRD NNIDIGDICI  300
FELMQKFELQ VRILRVGKEG MDGHHSEADL RGRNNGCSTT ASKMSRRKPK KKCETANSIK  360
GSSLCSLSNN CVTESEFLKR FGSLEKQGSF KGCMSMKSAP EEKMAAQYFV SSYPHFVRVM  420
KKFNISGSYT LKIPYQFSME HLPNCKTEIV LQNLNGQCWT VNSIPTLKVQ TLHTFCGGWM  480
AFVRDNDIQM GDICIFELVG KCEMRVHICG IGKKGLNYQN GMKNLPMA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083781.10.0B3 domain-containing protein Os01g0723500
RefseqXP_020551022.10.0B3 domain-containing protein Os01g0723500
TrEMBLA0A2G9HF120.0A0A2G9HF12_9LAMI; Uncharacterized protein
STRINGMigut.C00649.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126