PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100037230021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | B3 | ||||||||
Protein Properties | Length: 675aa MW: 75183.6 Da PI: 6.3109 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.3e-14 | 213 | 346 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....................................---..--SEEEEEETTS- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....................................ggkkeesktltledesgr 44 f+k l+ sd+++ grlvlpkk+ae+ +++++e+ l+++d +g+ Ote100037230021|100037230021 213 FEKMLSASDAGRIGRLVLPKKCAEAGphpylsggirkmqrfalqtiflllldqprirtmayfpSISHPEGLPLKVQDVKGK 293 899********************98899****9999999999999999888888888888888555557788********* PP EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 45 sWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +W +++++ +++s++yvl+ G +a +L++gD+v+F++ + e++l ++ + Ote100037230021|100037230021 294 EWVFQFRFwpNNNSRMYVLE-GITPCIQAMQLQAGDVVTFSRLE-PEGKLIMGGR 346 ******9989999999***9.********************665.6776776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.67E-12 | 210 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-23 | 210 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-15 | 211 | 347 | No hit | No description |
SMART | SM01019 | 1.1E-12 | 213 | 349 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-11 | 213 | 345 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-23 | 276 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-12 | 278 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS51050 | 13.34 | 512 | 562 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.3E-10 | 517 | 559 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MKDLSVKTWS AIAGSGPVPW RQAPSLFNSS TIQANVQLRM PFEIDVPGGI DRYGIGERLS 60 MVSPEKKQEP SYDRLANGKF RIGPSETHQN GNMGLNVKEQ HCPFTNDFNP MFPRNDSSSN 120 LNLGIASSSK NELDDVLASS IFSQSPAVPI SVGKKVCSQS GMDSSGEPQV RNGKSRGDGR 180 SRNQLLPRYR PQITDEELQQ ISGDSKSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAGPH 240 PYLSGGIRKM QRFALQTIFL LLLDQPRIRT MAYFPSISHP EGLPLKVQDV KGKEWVFQFR 300 FWPNNNSRMY VLEGITPCIQ AMQLQAGDVV TFSRLEPEGK LIMGGRKASV VPPIEQGEEV 360 AVIGSEASSP GDGSARNKAA DVLYVNGNMK EKILEDKTVT HVKRKNSNLN AKSKRLRIEN 420 EDMMELKLTY KEAQGLMRAP AKIVRTSFVV DGCEFEEFEI CHAGISYPVL QLPDLDLAPF 480 RKLNXXXXXX XXXXXXXXXI IGRPTILGLD HTGEKIQWIQ CEDCFKWRKV PADALVPSKW 540 TCPDNTWDLH RSRCSSAEQL TTEQLEQMLQ ATDKGEHFSI XXXXXXXXXX XXXXXXXPSN 600 NEESPTHDAN PFVAMEGLDA LADLAIQEEG DGLLDSSEXX XXXXXDETPT SQTQLCMHCL 660 SSTSQWQRNQ APAVM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-56 | 191 | 349 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096215.1 | 0.0 | B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A2G9GZX8 | 0.0 | A0A2G9GZX8_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M01204.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |