PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100037230021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 675aa    MW: 75183.6 Da    PI: 6.3109
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100037230021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.3e-14213346197
                                   EEEE-..-HHHHTT-EE--HHH.HTT.....................................---..--SEEEEEETTS- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....................................ggkkeesktltledesgr 44 
                                   f+k l+ sd+++ grlvlpkk+ae+                                      +++++e+  l+++d +g+
  Ote100037230021|100037230021 213 FEKMLSASDAGRIGRLVLPKKCAEAGphpylsggirkmqrfalqtiflllldqprirtmayfpSISHPEGLPLKVQDVKGK 293
                                   899********************98899****9999999999999999888888888888888555557788********* PP

                                   EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                            B3  45 sWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                   +W +++++  +++s++yvl+ G     +a +L++gD+v+F++ +  e++l ++ +
  Ote100037230021|100037230021 294 EWVFQFRFwpNNNSRMYVLE-GITPCIQAMQLQAGDVVTFSRLE-PEGKLIMGGR 346
                                   ******9989999999***9.********************665.6776776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.67E-12210244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-23210244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-15211347No hitNo description
SMARTSM010191.1E-12213349IPR003340B3 DNA binding domain
PfamPF023621.0E-11213345IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-23276348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-12278341IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5105013.34512562IPR011124Zinc finger, CW-type
PfamPF074963.3E-10517559IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MKDLSVKTWS AIAGSGPVPW RQAPSLFNSS TIQANVQLRM PFEIDVPGGI DRYGIGERLS  60
MVSPEKKQEP SYDRLANGKF RIGPSETHQN GNMGLNVKEQ HCPFTNDFNP MFPRNDSSSN  120
LNLGIASSSK NELDDVLASS IFSQSPAVPI SVGKKVCSQS GMDSSGEPQV RNGKSRGDGR  180
SRNQLLPRYR PQITDEELQQ ISGDSKSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAGPH  240
PYLSGGIRKM QRFALQTIFL LLLDQPRIRT MAYFPSISHP EGLPLKVQDV KGKEWVFQFR  300
FWPNNNSRMY VLEGITPCIQ AMQLQAGDVV TFSRLEPEGK LIMGGRKASV VPPIEQGEEV  360
AVIGSEASSP GDGSARNKAA DVLYVNGNMK EKILEDKTVT HVKRKNSNLN AKSKRLRIEN  420
EDMMELKLTY KEAQGLMRAP AKIVRTSFVV DGCEFEEFEI CHAGISYPVL QLPDLDLAPF  480
RKLNXXXXXX XXXXXXXXXI IGRPTILGLD HTGEKIQWIQ CEDCFKWRKV PADALVPSKW  540
TCPDNTWDLH RSRCSSAEQL TTEQLEQMLQ ATDKGEHFSI XXXXXXXXXX XXXXXXXPSN  600
NEESPTHDAN PFVAMEGLDA LADLAIQEEG DGLLDSSEXX XXXXXDETPT SQTQLCMHCL  660
SSTSQWQRNQ APAVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-561913492125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096215.10.0B3 domain-containing protein Os07g0563300
TrEMBLA0A2G9GZX80.0A0A2G9GZX8_9LAMI; Uncharacterized protein
STRINGMigut.M01204.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126