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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100036690012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 280aa MW: 30693.4 Da PI: 8.8045 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.1e-14 | 85 | 129 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky Ote100036690012|100036690012 85 PWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 129 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.552 | 78 | 134 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-16 | 80 | 133 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-17 | 81 | 132 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.8E-10 | 82 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-11 | 84 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.94E-10 | 85 | 130 | No hit | No description |
Pfam | PF00249 | 2.0E-11 | 85 | 129 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MLKSSESPSS ASTGGEIMLF GVRVRVDPMR KSVSMNNLSE YEPVVNDGTK NSEMSKRAPE 60 DGYASADDAV PQPSGGNRER KRGVPWTEEE HKLFLLGLQK VGKGDWRGIS RNYVKTRTPT 120 QVASHAQKYF LRXXXXXXXX XXXXXLFDIT TDSVTAMPIE EAKNHQESPV RPPTTVPLSI 180 ASNGNGFSVV PYPVTVAPVL FSASKAKNDV ANNSSQTITR PMQCSSAMVD LNLRNKIPQE 240 PLPLSLRLSL SSCQDQPSTQ ASAFQIMQGF KNEDCTISVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00631 | PBM | Transfer from PK23829.1 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071772.1 | 1e-112 | transcription factor MYB1R1 | ||||
Swissprot | Q2V9B0 | 6e-77 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A2G9GK84 | 1e-95 | A0A2G9GK84_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A4D9A626 | 7e-96 | A0A4D9A626_SALSN; Uncharacterized protein | ||||
STRING | XP_009760664.1 | 1e-78 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2574 | 23 | 51 |
Publications ? help Back to Top | |||
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