PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100036150021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 299aa    MW: 33595.4 Da    PI: 6.1595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100036150021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd llv +v+q+G+ +W++++   g++R+ k+c++rw +yl
  Ote100036150021|100036150021 14 KGPWTPEEDILLVSYVQQHGPANWRAVPTNTGLKRCSKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding491.4e-1567112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg +T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Ote100036150021|100036150021  67 RGTFTDQEEKMIIQLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                   899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.598961IPR017930Myb domain
SuperFamilySSF466892.4E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-241568IPR009057Homeodomain-like
CDDcd001671.55E-101661No hitNo description
PROSITE profilePS5129424.26562116IPR017930Myb domain
SMARTSM007178.2E-1566114IPR001005SANT/Myb domain
PfamPF002498.0E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2469117IPR009057Homeodomain-like
CDDcd001672.70E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRPPCCEKV GMKKGPWTPE EDILLVSYVQ QHGPANWRAV PTNTGLKRCS KSCRLRWTNY  60
LRPGIKRGTF TDQEEKMIIQ LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLSKKLKKLS  120
NEPFSNTTTS SHSISRGKWE RRLQTDINKA KQALQDALSI DENRCNLSEF LTSSSEKPSP  180
SSSSYASSTE NIARLLKGWV KKTPNSEDFK CSTSSSNNSG EVVDGGNLSE SFESLFGLEQ  240
SFDQSSDDFS RSTSPSIVND DSKPSPAEFV PLSVLEEWLL DDHGEGYLEN LSFDMETQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-27141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098622.11e-139myb-related protein 306
SwissprotP813921e-103MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2G9I4001e-129A0A2G9I400_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00921.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]