PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100036140061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 673aa MW: 75866.6 Da PI: 8.129

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100036140061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1.1e-18	19	74	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+ ++++++q++ Le++F+++++p++++r +L++ lgL+++q+k+WFqN+R+++k Ote100036140061\|100036140061 19 KRQYHRHSAHQVQHLEAFFKEHPHPDENQRLQLSRDLGLDTKQIKFWFQNKRTQKK 74 688999***********************************************988 PP
2	START	147.9	9.2e-47	195	414	4	206
HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72 +a++el+ ++ +e+p+Wv+s + +d+ k+ ++e +++sg v+m++++lv+++l+ + +W Ote100036140061\|100036140061 195 CAAMDELMELMRVEDPVWVTSTadgrcvlHRDSYDKLFPKPN---HfksatARMESSKESGEVPMPATDLVQTFLHPN-KW 271 589*****************77775555555555555553...2577999**********************. PP -TT-S....EEEEEEEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE CS START 73 detla....kaetlevissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR 144 +++ ka t++v++ g g l+lm+ ++ lsplv R+f f+Ry+rq++ +w+ vd+S d ++ + ++s+ R Ote100036140061\|100036140061 272 RDMFPcivaKARTIQVVDAGiafnGSLHLMYEKMHILSPLVVpREFFFIRYCRQMSTNTWAMVDMSYDLFTHFQ-DASSSR 351 *************************************8766*************************99.9* PP -EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 145 aellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 + ++pSg++i++ksng+s vtwvehv +++++ h l+r +v s++a gak+w atlqr c++ Ote100036140061\|100036140061 352 SWKFPSGCMIQDKSNGKSLVTWVEHVQVDDKSLtHRLYRDFVCSSYAYGAKRWIATLQRMCQR 414 *************************99988*************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-20	6	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.36E-18	12	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	16	76	IPR001356	Homeobox domain
SMART	SM00389	9.0E-16	18	80	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-16	19	74	IPR001356	Homeobox domain
CDD	cd00086	6.87E-16	19	77	No hit	No description
PROSITE pattern	PS00027	0	51	74	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.163	183	417	IPR002913	START domain
SuperFamily	SSF55961	2.47E-29	185	415	No hit	No description
CDD	cd08875	2.30E-93	189	413	No hit	No description
SMART	SM00234	1.2E-31	192	414	IPR002913	START domain
Pfam	PF01852	1.9E-40	195	414	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	5.9E-8	236	380	IPR023393	START-like domain
SuperFamily	SSF55961	1.09E-9	436	635	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MDAATGSGEE GSADSRKAKR QYHRHSAHQV QHLEAFFKEH PHPDENQRLQ LSRDLGLDTK 60 QIKFWFQNKR TQKKAQNERT NNNALRLENE RIRCENLAMR EALKNIICPS CRDPILHDQD 120 KHQGLLKLRN ENMRLREEAT HAYLHERRMN RMPPKSAPTP GMDNGMNYIG NPEAEDARSK 180 VIEEMDRGII METACAAMDE LMELMRVEDP VWVTSTADGR CVLHRDSYDK LFPKPNHFKS 240 ATARMESSKE SGEVPMPATD LVQTFLHPNK WRDMFPCIVA KARTIQVVDA GIAFNGSLHL 300 MYEKMHILSP LVVPREFFFI RYCRQMSTNT WAMVDMSYDL FTHFQDASSS RSWKFPSGCM 360 IQDKSNGKSL VTWVEHVQVD DKSLTHRLYR DFVCSSYAYG AKRWIATLQR MCQRAANSVS 420 PPTTPTHELE GVIHSPDGRR NLMKLSHKMV KNFHQVLNMS DRLDFPHLSE LYNSGVRVSL 480 RKSDGVGQPE GLIVSAATSL WLPFSIAHLF TFFADHNKRA QWDILSGGNP VNAIARISTG 540 TNSGNCISII QPFVPKENML MLQESSIDSL GASIIYAPVE LPAISSVVNG NDIMKIPILP 600 SGYVISCDGR TDKGGPSSSA KTSGSLLTVA FQMLVCSDSI SKQLNMESVA TVHSLISSTV 660 HNIKLALHCP DLD

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MDAATGSGEE GSADSRKAKR QYHRHSAHQV QHLEAFFKEH PHPDENQRLQ LSRDLGLDTK  60
QIKFWFQNKR TQKKAQNERT NNNALRLENE RIRCENLAMR EALKNIICPS CRDPILHDQD  120
KHQGLLKLRN ENMRLREEAT HAYLHERRMN RMPPKSAPTP GMDNGMNYIG NPEAEDARSK  180
VIEEMDRGII METACAAMDE LMELMRVEDP VWVTSTADGR CVLHRDSYDK LFPKPNHFKS  240
ATARMESSKE SGEVPMPATD LVQTFLHPNK WRDMFPCIVA KARTIQVVDA GIAFNGSLHL  300
MYEKMHILSP LVVPREFFFI RYCRQMSTNT WAMVDMSYDL FTHFQDASSS RSWKFPSGCM  360
IQDKSNGKSL VTWVEHVQVD DKSLTHRLYR DFVCSSYAYG AKRWIATLQR MCQRAANSVS  420
PPTTPTHELE GVIHSPDGRR NLMKLSHKMV KNFHQVLNMS DRLDFPHLSE LYNSGVRVSL  480
RKSDGVGQPE GLIVSAATSL WLPFSIAHLF TFFADHNKRA QWDILSGGNP VNAIARISTG  540
TNSGNCISII QPFVPKENML MLQESSIDSL GASIIYAPVE LPAISSVVNG NDIMKIPILP  600
SGYVISCDGR TDKGGPSSSA KTSGSLLTVA FQMLVCSDSI SKQLNMESVA TVHSLISSTV  660
HNIKLALHCP DLD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012845087.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC8-like isoform X1
TrEMBL	A0A022QU91	0.0	A0A022QU91_ERYGU; Uncharacterized protein
STRING	Migut.H02245.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1021	17	32