PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100033550071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 1006aa MW: 111706 Da PI: 4.9701

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100033550071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63	5.9e-20	76	122	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde ++++v+++G++ W+tIa++++ gR +kqc++rw+++l Ote100033550071\|100033550071 76 KGPWSKEEDEVIIELVNKYGPKKWSTIASHLP-GRIGKQCRERWHNHL 122 79****************************.***********97 PP
2	Myb_DNA-binding	35.8	1.9e-11	128	180	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 + +WT++E+ l++a++ G++ W+ + ++ +Rt++ +k++w+k Ote100033550071\|100033550071 128 KEAWTQDEEITLIHAHQIIGNK-WAELTKFLPgsillpicATRTDNAIKNHWNK 180 579*****************.****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.252	25	70	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.3E-10	52	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	33.512	71	126	IPR017930	Myb domain
SuperFamily	SSF46689	3.67E-27	73	178	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-19	75	124	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-18	76	122	IPR001005	SANT/Myb domain
CDD	cd00167	1.08E-16	78	122	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-27	83	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.774	127	186	IPR017930	Myb domain
SMART	SM00717	4.4E-9	127	184	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-10	128	180	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-16	130	181	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence Send to blast
MLPEIVCKEL VLYMGGRVDQ LGVPQKDNGL LKRMRYCEWL FNVSKGKIGX AECFKDRTDV 60 QCLHRWQKVL NPDLVKGPWS KEEDEVIIEL VNKYGPKKWS TIASHLPGRI GKQCRERWHN 120 HLNPSINKEA WTQDEEITLI HAHQIIGNKW AELTKFLPGS ILLPICATRT DNAIKNHWNK 180 TSSTSKAQQS SEDNSVVKDG VEVEEASECS QGSNIASMSQ PTGNLILHSS RDCRVTQESS 240 SIPCSEDYRP AFQEAAFAAP EAPCELSYKF LQHDFSLDWG AFAGKDWQLN PDELPDMSLL 300 DLGQESPGMF ILTSSSVQDI NHEDVPFPQE SHIQLGTPTS MEMDSDTQNL VPTSDCRMVY 360 PEAECGGCCP SEIVVSHIDS LLHHYSRIQI PENGTFASQS CSTPSGVMGS SFSQPLLPLP 420 TQLHAVDGPL VLNTDPNQHS NPPNTDDGFI YPKESDGLPW EDNSVEAKET PKLVSVNDLA 480 LTSSNDSRDC PSVDKDNKTE DQKDSGTLFY EPPRFPSLDI PFFNCDLIQS GSDMHQDYSP 540 LGIRQLMISS MTPFKLWDSP SRDDSPDVIL KSAAKSFTST PSILKKRHRD LMSPLSEKRD 600 EKKLEGCRKQ ESYSNRANDV SRLEVMFDEC IHNGQVLSQS PSKRNLVSFM EKENATLASV 660 QKQNEGNKSI VISEREIAAE EFNSDISDYS NKTTEKFAAI DDRTKSSDNN DITETYILSH 720 EFMSLVIPCG CADCSCTRIL LIINWHHLSQ ANASSGVLQC DVNDLLFFSP DRFVIKNDRA 780 IGLSARALVK QSAGRLDAVS KHGAILTSSD KCLSVLCSPR SCSKDRTNLF ITASIQSSSP 840 LEKKVESSGK GLSENNNIFL ETPFKRTMDS PSAWKSPWFI NTFVPGPRVD TDITIEDIGY 900 FLSPRDGSYD AIGLMKQLEV QTAGAFADAQ KVLGDETPAS IMKGKCSINH DEEKENNHNP 960 SSVSSFMTER RMLDFSECGT PGKESAKFSS SAGFSSPSSY LLKSCR

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence Send to blast

MLPEIVCKEL VLYMGGRVDQ LGVPQKDNGL LKRMRYCEWL FNVSKGKIGX AECFKDRTDV  60
QCLHRWQKVL NPDLVKGPWS KEEDEVIIEL VNKYGPKKWS TIASHLPGRI GKQCRERWHN  120
HLNPSINKEA WTQDEEITLI HAHQIIGNKW AELTKFLPGS ILLPICATRT DNAIKNHWNK  180
TSSTSKAQQS SEDNSVVKDG VEVEEASECS QGSNIASMSQ PTGNLILHSS RDCRVTQESS  240
SIPCSEDYRP AFQEAAFAAP EAPCELSYKF LQHDFSLDWG AFAGKDWQLN PDELPDMSLL  300
DLGQESPGMF ILTSSSVQDI NHEDVPFPQE SHIQLGTPTS MEMDSDTQNL VPTSDCRMVY  360
PEAECGGCCP SEIVVSHIDS LLHHYSRIQI PENGTFASQS CSTPSGVMGS SFSQPLLPLP  420
TQLHAVDGPL VLNTDPNQHS NPPNTDDGFI YPKESDGLPW EDNSVEAKET PKLVSVNDLA  480
LTSSNDSRDC PSVDKDNKTE DQKDSGTLFY EPPRFPSLDI PFFNCDLIQS GSDMHQDYSP  540
LGIRQLMISS MTPFKLWDSP SRDDSPDVIL KSAAKSFTST PSILKKRHRD LMSPLSEKRD  600
EKKLEGCRKQ ESYSNRANDV SRLEVMFDEC IHNGQVLSQS PSKRNLVSFM EKENATLASV  660
QKQNEGNKSI VISEREIAAE EFNSDISDYS NKTTEKFAAI DDRTKSSDNN DITETYILSH  720
EFMSLVIPCG CADCSCTRIL LIINWHHLSQ ANASSGVLQC DVNDLLFFSP DRFVIKNDRA  780
IGLSARALVK QSAGRLDAVS KHGAILTSSD KCLSVLCSPR SCSKDRTNLF ITASIQSSSP  840
LEKKVESSGK GLSENNNIFL ETPFKRTMDS PSAWKSPWFI NTFVPGPRVD TDITIEDIGY  900
FLSPRDGSYD AIGLMKQLEV QTAGAFADAQ KVLGDETPAS IMKGKCSINH DEEKENNHNP  960
SSVSSFMTER RMLDFSECGT PGKESAKFSS SAGFSSPSSY LLKSCR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-56	51	181	33	154	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-56	51	181	33	154	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089667.1	0.0	transcription factor MYB3R-1 isoform X1
Refseq	XP_011089827.1	0.0	transcription factor MYB3R-1 isoform X1
Refseq	XP_011089990.1	0.0	transcription factor MYB3R-1 isoform X1
Refseq	XP_020553179.1	0.0	transcription factor MYB3R-1 isoform X1
Refseq	XP_020553183.1	0.0	transcription factor MYB3R-1 isoform X1
TrEMBL	A0A4D9B492	0.0	A0A4D9B492_SALSN; Uncharacterized protein
STRING	Migut.E01513.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3107	24	48