PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100032630141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 577aa MW: 64774.9 Da PI: 5.591

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100032630141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	265.2	2.2e-81	194	563	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaa 80 lv++Ll+cAe v++++ +a + L + + l+s +g+p+qRl+ yfteAL +++ r ++ + k l + +++ +++ Ote100032630141\|100032630141 194 LVQTLLSCAEKVDKKKYDEACERLLECEILSSAQGSPVQRLVCYFTEALYEKMDReMGRVTPKGLGKKVENPLLAVNSPDE 274 6899*************************************************44444555554444444444444444 PP GRAS 81 lkl.fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeele 159 +++ f+ Pi +++ ++ qa+++ + ++++vH iDf+i G++ + L+qaLa+R ++ ++l+iT+vg+ s+ +++ Ote100032630141\|100032630141 275 TRIaFHIELPISQITKFAGIQAVVDNIGEARKVHFIDFEIRTGIHCIILMQALADRCgHPIHHLKITAVGK---MSEASIK 352 44459999*********************************************44556*****...689 PP GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 +tg++L +fA++lg+pf+f+v++++++ +l+ + ++++++E++aV + ++ l+++ ++v+k+++ l+ v+v Ote100032630141\|100032630141 353 ATGRQLMSFAQSLGLPFSFHVVMVTDVLELNENLFEMDTEEVIAVYAEYTFTHMI----GLPNRLEHVMKVMRALNFCVMV 429 *********************************************999998....66667777********** PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 v+e e+++ns+ F++rf+eal +y a f+s+++ + +++++r E+ ++g +i+n+va+eg+er+ rh + Wr+ +++ Ote100032630141\|100032630141 430 VAEVEVNCNSPVFVDRFVEALIFYGAYFESMAECV-KNEKQRFIGEATCFGSSIRNIVATEGDERKIRHVRIDVWRSFFTR 509 ***************************9886.8889************************************* PP GRAS 322 aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +GF++++ls + + qa+l++++++ + y+ + + +sl++gWk+ p+ s+SaW+ Ote100032630141\|100032630141 510 FGFEEAELSMSSVYQANLVVKNFAhGSSYSFDVDGKSLIIGWKGTPISSLSAWK 563 ********************8888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.13	168	542	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-79	194	563	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MLSGIFQSER FHSCGAVDDL SLELEKHSCF CGGEDMDMDS FCSVKSFSAD DSDQQEYVAF 60 GNQVHHQLQQ FGDTDHLYLH TPPKSGDDSR KVVPVDSQKC SNSIELEKKG SFQILKKYAS 120 RCRRLKGENV NFTSYDRACR TSWGLSIETI VHLGAEKFIE ISSSELSNEL SVLSHPYASS 180 ILCLSKEDFE GVQLVQTLLS CAEKVDKKKY DEACERLLEC EILSSAQGSP VQRLVCYFTE 240 ALYEKMDREM GRVTPKGLGK KVENPLLAVN SPDETRIAFH IELPISQITK FAGIQAVVDN 300 IGEARKVHFI DFEIRTGIHC IILMQALADR CGHPIHHLKI TAVGKMSEAS IKATGRQLMS 360 FAQSLGLPFS FHVVMVTDVL ELNENLFEMD TEEVIAVYAE YTFTHMIGLP NRLEHVMKVM 420 RALNFCVMVV AEVEVNCNSP VFVDRFVEAL IFYGAYFESM AECVKNEKQR FIGEATCFGS 480 SIRNIVATEG DERKIRHVRI DVWRSFFTRF GFEEAELSMS SVYQANLVVK NFAHGSSYSF 540 DVDGKSLIIG WKGTPISSLS AWKFNVPSVF DSPSLSS

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MLSGIFQSER FHSCGAVDDL SLELEKHSCF CGGEDMDMDS FCSVKSFSAD DSDQQEYVAF  60
GNQVHHQLQQ FGDTDHLYLH TPPKSGDDSR KVVPVDSQKC SNSIELEKKG SFQILKKYAS  120
RCRRLKGENV NFTSYDRACR TSWGLSIETI VHLGAEKFIE ISSSELSNEL SVLSHPYASS  180
ILCLSKEDFE GVQLVQTLLS CAEKVDKKKY DEACERLLEC EILSSAQGSP VQRLVCYFTE  240
ALYEKMDREM GRVTPKGLGK KVENPLLAVN SPDETRIAFH IELPISQITK FAGIQAVVDN  300
IGEARKVHFI DFEIRTGIHC IILMQALADR CGHPIHHLKI TAVGKMSEAS IKATGRQLMS  360
FAQSLGLPFS FHVVMVTDVL ELNENLFEMD TEEVIAVYAE YTFTHMIGLP NRLEHVMKVM  420
RALNFCVMVV AEVEVNCNSP VFVDRFVEAL IFYGAYFESM AECVKNEKQR FIGEATCFGS  480
SIRNIVATEG DERKIRHVRI DVWRSFFTRF GFEEAELSMS SVYQANLVVK NFAHGSSYSF  540
DVDGKSLIIG WKGTPISSLS AWKFNVPSVF DSPSLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-40	194	563	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100773.1	0.0	scarecrow-like protein 18
TrEMBL	A0A4D9A967	0.0	A0A4D9A967_SALSN; Uncharacterized protein
STRING	Migut.G00048.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49